Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq10 147 2e-30 seq12 129 6e-25 seq21 105 7e-18 >seq10 Length=3900288 Score = 147 bits (162), Expect = 2e-30 Identities = 571/884 (65%), Gaps = 25/884 (3%) Strand=Plus/Minus Query 153602 AGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCA 153661 ||| |||||||| ||||| || ||| || | | | |||||| || ||||||| ||| Sbjct 3135913 AGAAGCCAGATTGCAGACAGCAACCTCATCCGGGGCTGTGTACTCGACAATCTCGGTGCA 3135854 Query 153662 GAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTC 153721 ||| ||| || | ||| ||||| || | ||| ||||| || | ||||| || || Sbjct 3135853 GAGATTGGAGCTTCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATC 3135794 Query 153722 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATG 153778 ||| |||||||||| || || ||||| || | || | ||| | ||| Sbjct 3135793 CTTGTAGAGCATGTAGGGAGTACCCGTCTCAGTCTGGGCCTCAAGGATGGCATACCA--- 3135737 Query 153779 CAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAG 153838 ||| | ||| || || ||| || |||||||| | ||||||| |||||| || Sbjct 3135736 CAGCTTCTGGGCCTTGACTGTCTGACGGCCACGGCCCTCCTTTTCGTATCTCTCGTAGAG 3135677 Query 153839 TCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAG 153898 || || ||||||||||| ||||| || || ||| | ||| || || | || Sbjct 3135676 CTCCTTGAAGTCGTCGCCGTACACATCGGCAAGACCTGGAGCTTCATGAGGGCAGAAAAG 3135617 Query 153899 CGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTA 153958 | ||| | || | ||| || |||||||| || || ||| | ||| || Sbjct 3135616 AGTCCATTCCTGGTTCTTCTCGACACGCTCCATGAACAAGTCGGGAGTCCACATCGCATA 3135557 Query 153959 CATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGA-GCACGC 154017 | | ||| || ||| | |||||| ||| ||| | | || || | | || | Sbjct 3135556 GAACAAGTCACGAGCCCGGATTTCCTCCTTGCCGTGGTTCTTTCTTAGGTTCAAGAACTC 3135497 Query 154018 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---C 154074 | ||| |||||||||||||| || | ||||| ||| | || || ||||| | Sbjct 3135496 AA-AGACATCGGCGTGCCAGGGCTCCAAGTAGATGGCGAAAGCGCCCGGTCGCTTATTGC 3135438 Query 154075 CGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGC 154134 ||||||| ||||||| ||| || | || ||||| || || | |||||| ||||| Sbjct 3135437 CGCCCTGGTCGACGTAGCGGGCCGTGTTATTGAACACACGGAGCATGGGAATGAGGCCAT 3135378 Query 154135 TTGCGGTGCCGTTGGTCG----AATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACG 154190 ||| ||| || ||||| ||| | | | | || | ||| | || ||| Sbjct 3135377 TTGAGGTTCCATTGGTTCCTGCAATATAGGATCCCGTTGCACGAATGCAGT-GA-GCA-- 3135322 Query 154191 TTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCC--AGCGTCCTG 154247 || | |||||| || || || || ||| || || || ||| || | || || | Sbjct 3135321 TTGAGGCCAATACCACCAGCTGT-CTTGGAGAT--CATGGCACACGTCTTGAGAGTGTCG 3135265 Query 154248 TAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGA 154307 ||||| || |||||||| || || | | ||| |||||| || || | | || || Sbjct 3135264 TAGATACCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCAGGAGGATAGCTGGGGC 3135205 Query 154308 ATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATC 154367 |||||||||| ||||| || || || || || || || ||| ||| Sbjct 3135204 TGTGGCGTTCCCGCATTGAAGAGTGTCGGGGATGCATGAGTGAAGCACTTCTGGGACATG 3135145 Query 154368 ATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGC 154427 | ||| || |||||||| | || ||||| |||||||| ||||||| || || ||| Sbjct 3135144 AGATTGTATGTCTCGATGGCCTTCTCAATATCGTCGCCGTGGATGCCGACAGCCACACGC 3135085 Query 154428 ATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTT 154471 |||| ||| ||||| || |||||||||||| ||| | ||||| Sbjct 3135084 ATGATCATATGCTGTGGTCGTTCGGCGACTTGCTTGCCGATCTT 3135041 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || |||||||| || |||| || || | |||| | ||| ||| | | Sbjct 3136487 GGTTGACGACCTGAAACTCACCAGCCAGGACACGGCGGGAATAGATGTTGGAAGTATATG 3136428 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | |||||| ||||||| ||||| || || || | || | ||||| |||||| || | Sbjct 3136427 GCTCAAAGCATTCGTTGTTGCCAAGAATCTGCGAGGTTGACGCGGTAGGCATGGGAGCAA 3136368 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 | | || ||| || || | |||| ||||||| |||||| | | ||| |||| Sbjct 3136367 CAAGCAGAGAGTTGCGAACCCCGTATTTGGCAATGTCGGCCTTCAGTGAGTCCCAGTCCC 3136308 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTG 153244 |||| | || || || | |||||||||||||| || Sbjct 3136307 ACAGGTCGGAAGGAGTAACATTCCACATGTCGTATTG 3136271 >seq12 Length=2267901 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || | |||| | ||||||| || || ||||||||||||||| Sbjct 994072 CCGCCACGAAGACGGAGGACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTC 994013 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| |||||||| | |||| || ||||| || || ||||| Sbjct 994012 AGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGA 993953 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | ||||| | | ||||||| | ||||| || Sbjct 993952 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATTGT-CGATGGTGTCGCTGGACTCGAC 993894 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || |||||||| || ||||| ||||||||||| Sbjct 993893 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAAATCTGCAT 993846 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | || || ||||| ||||| || |||| | | Sbjct 994721 CTCCTTCTGGATGTTGTAGTCGGATAGGGTCCGGCCATCCTCAAGTTGCTTGCCGGCAAA 994662 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| || | ||| ||||| || || ||||| || ||||| ||| || ||| | | Sbjct 994661 GATCAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGATTTGACGTT 994602 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||| | ||| || || | ||| | || || |||||||| || || || Sbjct 994601 GTCGATGGTGTCTGAGCTCTCAACTTCCAGCGTAATAGTCTTGCCAGTCAGGGTCTTGAC 994542 Query 138603 AAAAATCTGCAT 138614 |||||||||||| Sbjct 994541 AAAAATCTGCAT 994530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || |||||||||||| | || || ||||||||||| || |||| | Sbjct 994267 GATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCA 994208 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| ||||| || || || ||||| || ||||| || || ||| | || | || | Sbjct 994207 AAGATGAGACGTTGCTGATCTGGAGGAATGCCTTCCTTATC-TTGAATCTTGCTCTTGAC 994149 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | ||||| ||||||| || | || || |||||||| || | Sbjct 994148 GTTG-TCGATGGTGTCACTGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCT 994090 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 994089 TCACGAAGATTTGCAT 994074 >seq21 Length=3175452 Score = 105 bits (116), Expect = 7e-18 Identities = 267/403 (66%), Gaps = 11/403 (3%) Strand=Plus/Plus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CC 52385 || ||| | ||||| ||||| | ||||| ||| ||||||| ||||| | || Sbjct 2034725 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAGGTGGATCTC---CGACAAGGAGTCC 2034781 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || | || | || |||| || ||||| |||||||| | || |||||||| Sbjct 2034782 ACCTTTGCTCAACGACTGGTTGCTTTCGCAGCCGTCGAGGGTATCTTCTTTTCCGGGTCG 2034841 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 || || || ||||| | | || | || ||| | ||||| ||||| || || || Sbjct 2034842 TTCGCTGCAATCTTCTGGCTCAAGAGCAAGGGCCTGATGCCGGGCCTTACCTTTTCAAAT 2034901 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGAC 52564 || | || || || ||||| || ||||||| || ||||| ||||| || || ||| | Sbjct 2034902 GAACTCATCTCTCGTGACGAGGGCATGCACACCGATTTTGCATGCCTGCTGCTGCAACAT 2034961 Query 52565 GCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGC 52624 | | | || ||| | | ||| || | | ||| ||||| || || Sbjct 2034962 C----TCAAGCACAAGCCCGATCCAAAGCTCATCGAGAACGTCATCACCGAGGCAGTCGC 2035017 Query 52625 TATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCA 52684 ||||||||||||||| || || | ||||| || |||| |||||||||||||| | | Sbjct 2035018 TATCGAAAAGGAGTTCTTAACCGAAGCGCTCCCTGTCGGTTTGCTGGGCATGAACTCCAA 2035077 Query 52685 GTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTG 52727 | ||||| ||||||| |||||||| || || ||| || || Sbjct 2035078 GCTTATGTGTCAGTACATTGAGTTTGTCGCCGACCGTTTGCTG 2035120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262257324560