Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq12 138 1e-27 >seq12 Length=2267901 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||| |||| || |||||||| || || ||||| |||| || ||||| ||| || Sbjct 994054 ACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 993995 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 |||||||| |||||| |||| | ||||||||||| ||||| ||||| ||||||||| | Sbjct 993994 AGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 993935 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| |||||| | |||||| || | || | || ||| Sbjct 993934 ATCTTGCTCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTG 993875 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || ||||| ||||||||||| Sbjct 993874 CCAGTCAGGGTCTTTACGAAAATCTGCAT 993846 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || || |||||| || | || ||| || || || ||||| ||| Sbjct 994756 CCACCTCGCAGTCTCAGCACCAAGTGCAAGGTGCTCTCCTTCTGGATGTTGTAGTCGGAT 994697 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || || || || |||||| || |||||| ||||| || Sbjct 994696 AGGGTCCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCGGGTGGG 994637 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || |||| ||||| ||| |||||| | ||||| || Sbjct 994636 ATACCCTCCTTGTCCTGGATCTTGGATTTGACGTTGT-CGATGGTGTCTGAGCTCTCAAC 994578 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || ||||| ||||| || || |||||||||||||| Sbjct 994577 TTCCAGCGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 994530 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || |||| | || | ||| | || || || || || || |||||||| Sbjct 994528 CCACCACGCAATCTGAGAACGAGATGCAGAGTGGATTCCTTCTGGATGTTGTAATCTGAG 994469 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || |||||| |||||||||| || || || || || Sbjct 994468 AGTGTACGGCCGTCTTCAAGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGGG 994409 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| ||| || ||| ||||| |||| || | ||||| | | || || Sbjct 994408 ATGCCCTCCTTATCCTGAATCTTCGTCTTGACGTTG-TCAATTGTGTCTGAAGATTCAAC 994350 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| ||||| |||| ||||| ||||| || ||||| Sbjct 994349 CTCGAGTGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 994302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500663293520