Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq12 113 4e-20 seq10 98.7 9e-16 seq9 84.2 2e-11 >seq12 Length=2267901 Score = 113 bits (124), Expect = 4e-20 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189 || |||||||| || |||||||| ||||| || ||||| ||| || | | || | Sbjct 994510 ACGAGATGCAGAGTGGATTCCTTCTGGATGTTGTAATC--TGAGAGTGTACGGCCGTCTT 994453 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 | | || || || ||| | ||||||||||| |||||||| || ||||| || ||||| | Sbjct 994452 CAAGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGGGATGCCCTCCTTATCCT 994393 Query 45250 GAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 |||| || |||| || | || | ||||| ||||| || || ||||| || | ||| Sbjct 994392 GAATCTTCGTCTTGA-CGTTGTCAATTGTGTCTGAAGATTCAACCTCGAGTGTGATCGTC 994334 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | ||||| ||||| |||||||| Sbjct 994333 TTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 994302 Score = 105 bits (116), Expect = 6e-18 Identities = 170/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || ||||| || ||||| || || ||| Sbjct 994303 ATACCACCACGGAGACGGAGGACGAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCG 994244 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||| ||||| || | || | |||||||| || || Sbjct 994243 GAAAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCTGGA 994184 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||||||||| ||||||||||| || |||| || | || | |||||| ||||| Sbjct 994183 GGAATGCCTTCCTTATCTTGAATCTTGCTCTTGA-CGTTGTCGATGGTGTCACTGGACTC 994125 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACC 45349 || |||||||| | || ||||| || || || || || || |||||||| ||| || Sbjct 994124 AACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATACCGCCACG 994065 Query 45350 AA 45351 || Sbjct 994064 AA 994063 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || ||||| || || ||||| || || ||||| | ||| ||| || Sbjct 994054 ACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 993995 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||||| || ||| | || | || ||||| || || ||||||||||| || || || Sbjct 993994 AGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 993935 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| || | ||||||| |||||||| || ||||| | || ||| Sbjct 993934 ATCTTGCTCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTG 993875 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || ||||| ||||| |||||| Sbjct 993874 CCAGTCAGGGTCTTTACGAAAATCTGCATC 993845 >seq10 Length=3900288 Score = 98.7 bits (108), Expect = 9e-16 Identities = 585/925 (63%), Gaps = 19/925 (2%) Strand=Plus/Plus Query 122841 TACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTCGAGGAAAAG 122900 ||| |||| ||||| | || ||||| || || ||| || || |||| | | Sbjct 3134996 TACCAATACTTTGGCTTTAAGACGTTGGAGAAATCATACCTGCTCAAGATCGGCAAGCAA 3135055 Query 122901 GTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGAC 122960 ||||||||||| || |||||| ||||||| || ||| | ||| | ||||| ||| Sbjct 3135056 GTCGCCGAACGACCACAGCATATGATCATGCGTGTGGCTGTCGGCATCCACGGCGACGAT 3135115 Query 122961 ATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGT 123020 || || || || | ||| || ||| || | ||||| || || | ||||| || || Sbjct 3135116 ATTGAGAAGGCCATCGAGACATACAATCTCATGTCCCAGAAGTGCTTCACTCATGCATCC 3135175 Query 123021 CCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACC 123080 || || | ||| || || ||| ||| ||| | || || || || ||| || | Sbjct 3135176 CCGACACTCTTCAATGCGGGAACGCCACAGCCCCAGCTATCCTCCTGCTTCTTGATCGAC 3135235 Query 123081 TTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGAT-TGCGCGTTGATTTC 123139 || || ||||||||| |||||||| || ||| | | || || || |||| || Sbjct 3135236 ATGAAGGAGGACAGCATCGAGGGTATCTACGACACTCT-CAAGACGTGTGCCATGATCTC 3135294 Query 123140 CAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC-A 123198 ||| | || || || ||| | || | ||| | | | | | ||| | || | Sbjct 3135295 CAAGACAGCTGGTGGTATTGGCCTCAATGCTCACTGCATTCGTG-CAACGGGATCCTATA 3135353 Query 123199 TCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACG 123258 | | | ||| | |||| | | || ||| ||||||| || || | ||||||| Sbjct 3135354 TTGCAGGAACCAATGGAACCTCAAATGGCCTCATTCCCATGCTCCGTGTGTTCAATAACA 3135413 Query 123259 CCGTGCGGCACGTCGACCAGGGCGGCAA-ACGCAAA--GGCGCGATGGCGATCTATCTAG 123315 | | || ||||||||||||||||||| | || | ||||| | || ||||| | | Sbjct 3135414 CGGCCCGCTACGTCGACCAGGGCGGCAATAAGCGACCGGGCGCTTTCGCCATCTACTTGG 3135473 Query 123316 AACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAG 123375 | || ||||||| ||||| | || || || || ||| | ||| || ||| | Sbjct 3135474 AGCCCTGGCACGCCGATGTCTTTGAGTTCTTGAACCTAAGAAAGAACCACGGCAAGGAGG 3135533 Query 123376 AAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCG 123435 ||| || || || ||||| || || | ||| ||||| ||||| ||| || | Sbjct 3135534 AAATCCGGGCTCGTGACTTGTTCTATGCGATGTGGACTCCCGACTTGTTCATGGAGCGTG 3135593 Query 123436 T--AAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGG-CTTGAGCG 123492 | | |||| || | ||| | || | || || || ||| || |||| || Sbjct 3135594 TCGAGAAGA--ACCAGGAATGGACTCTTTTCTGCCCTCATGAAGCTCCAGGTCTTGC-CG 3135650 Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGG 123552 | || |||||| | | || | ||| | |||| | |||||| || ||| | | Sbjct 3135651 ATGTGTACGGCGACGACTTCAAGGAGCTCTACGAGAGATACGAAAAGGAGGGC---CGTG 3135707 Query 123553 TTAGTCAG---GTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAA 123609 ||||| || ||| | | ||| | || | || | || || | Sbjct 3135708 GCCGTCAGACAGTCAAGGCCCAGAAGCTGTGGTATGCCATCCTTGAGGCCCAGACTGAGA 3135767 Query 123610 CCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACT 123669 | || || || |||||||||||||| || |||||||||||||| | ||| |||| |||| Sbjct 3135768 CGGGTACTCCCTACATGCTCTACAAGGATGCCTGCAACAGGAAGAGCAACCAGAAGAACT 3135827 Query 123670 TGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATC 123729 ||||||| || | | ||||| ||| |||| ||| |||| |||| | | ||| Sbjct 3135828 TGGGAACCATTCGAAGCTCCAATCTCTGCACCGAGATTGTCGAGTACACAGCCCCGGATG 3135887 Query 123730 AAGTGGCCGTGTGTAATTTGGCTTC 123754 | || || || || ||| ||||||| Sbjct 3135888 AGGTTGCTGTCTGCAATCTGGCTTC 3135912 >seq9 Length=4529175 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 45151 CCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATA 45210 |||| |||||||| || ||||| | || ||| || | ||| || || ||| | | Sbjct 3501055 CCTTCTGGATATTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGTTGCTTGCCCGCGAAGA 3500996 Query 45211 TCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTT 45270 |||| || ||||||||||| || |||||||| || || || || || ||||| | Sbjct 3500995 TCAACCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGATTTGACATTGT 3500936 Query 45271 CTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAA 45330 | | |||||||| || ||||| ||||| || | || ||||| || || || || || | Sbjct 3500935 CGATCGTGTCGGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 3500876 Query 45331 A 45331 | Sbjct 3500875 A 3500875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003070049080