Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq10 170 3e-37 seq21 123 4e-23 >seq10 Length=3900288 Score = 170 bits (188), Expect = 3e-37 Identities = 491/734 (67%), Gaps = 25/734 (3%) Strand=Plus/Minus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896 ||||| || || ||||| ||||||| | ||||| | || | | || ||||||||| Sbjct 3136836 TCTTGGTCGACAGTGAATTGAATGGGTTGTGTGGCAGCCATGGTGCGGAGGTAGTACATG 3136777 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 |||||||| || ||| ||| ||| || | ||||||||| | | ||||| || | | Sbjct 3136776 CCGGTCTTGAGACCCATCTTCCAGCCAGCAAAGTGCATGGATGTGATTTTGCCCATGGTC 3136717 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 || || || ||| ||||||||||| ||| ||||||||||| ||| || || ||||| Sbjct 3136716 GGTTCCTTCAAGTGGATGTTCAGAGATTGGGACTGGTCGATGAA-GGCACCTCGGTCTGC 3136658 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGG 204074 ||||| | || || ||| || || ||||| || |||||| ||| || || || Sbjct 3136657 CGCCATTTGGAGGATTGTCCGTTGACTGATTTCCCAGACAGTCTTGTACAACGCCT-TGA 3136599 Query 204075 TGTGTTGAGGCACATCTTCCCACGTCCTGATC-GAGCCGTTGTCGGCCATCAGTCTCATC 204133 ||| ||| | | | | || |||| | || || ||||| || | | || Sbjct 3136598 TGTCAGCAGGGATGT-TGGGGATGTTCTGAACTGAACCACCATCGGCGATAATACGGTTC 3136540 Query 204134 CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATG 204193 || | | || ||| | ||| | || ||| ||| || ||| ||||||| | Sbjct 3136539 TTCATGTTGTCTGACCAGAGGCCAAGGTCGACCAGGTCCTTCAACAGCCATGGGTTGACG 3136480 Query 204194 ATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAAC 204253 | |||||| || || | ||| || | |||| | | |||| || |||| || || Sbjct 3136479 ACCTGAAACTCACCAGCCAGGACACGGCGGGAATAGATGTTGGAAGTATATGGCTCAAAG 3136420 Query 204254 GCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGG 204313 ||||||||||| | |||||| | ||| || || ||||||||||| | ||||| Sbjct 3136419 CATTCGTTGTTGCCAAGAATCTGCGAGGTTGACGCGGTAGGCATGGGAGCAACAAGCAGA 3136360 Query 204314 GAGTTGCGCACACCGTATTTTTGGACCCTG-CG--CTTCAGAGAGGTCCAGTCGTGCA-- 204368 |||||||| || |||||||| | | || || |||||| ||| |||||| || Sbjct 3136359 GAGTTGCGAACCCCGTATTT---GGCAATGTCGGCCTTCAGTGAGTCCCAGTCCCACAGG 3136303 Query 204369 TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGC 204428 ||| | || | || |||||||||| | || | ||||||| ||||||||| | Sbjct 3136302 TCGGA--AGGAGTAACATTCCACATGTCGTATTGGAGAGTGCCTTGGGAGACTGGGCTCC 3136245 Query 204429 CCTTGTACGTCGGATAAG-GC--TGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGG 204485 ||| ||| || ||| | || || ||| || ||| |||| ||| || || | | | Sbjct 3136244 CCTCGTATGTTTCATAGGCGCCTTGCTCC-CT--TGCAAGCTCGCATGAAGCAGTGAGAG 3136188 Query 204486 CGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGCG-GCCTCCGTTCCGTCA 204544 | | ||| ||||||||||||||||| | ||| | | || || ||||||| |||| Sbjct 3136187 CAGCGTGGTAAATGGTCTCAAAGATCTGGATGTTGAGT-TGTCGAGCCTCCGGAGAGTCA 3136129 Query 204545 AACGCCAGACCCAG 204558 || | ||||| ||| Sbjct 3136128 AAGGGCAGACGCAG 3136115 >seq21 Length=3175452 Score = 123 bits (136), Expect = 4e-23 Identities = 274/405 (68%), Gaps = 7/405 (2%) Strand=Plus/Minus Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAG 159804 |||||| | ||| || ||||| || ||||| |||||| ||| |||| || ||||| Sbjct 2035120 CAGCAAACGGTCGGCGACAAACTCAATGTACTGACACATAAGCTTGGAGTTCATGCCCAG 2035061 Query 159805 CAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCAC 159864 || | || ||||||||||| | | |||||||| || || |||| || ||||| | Sbjct 2035060 CAAACCGACAGGGAGCGCTTCGGTTAAGAACTCCTTTTCGATAGCGACTGCCTCGGTGAT 2035001 Query 159865 AATCTGCGAGACACG-TTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGC 159923 | | | || | || | | | |||||| | | || | | | ||| |||| Sbjct 2035000 GACGTTCTCGATGAGCTTTGGATCG-GGCTTGTGCTTGAGATGTTGC---AGCAGCAGGC 2034945 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 | ||||| ||| ||||| |||||||| |||||||||| || || || | | | |||| Sbjct 2034944 ATGCAAAATCGGTGTGCATGCCCTCGTCACGAGAGATGAGTTCATTTGAAAAGGTAAGGC 2034885 Query 159984 CCGGCATGA-TCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAG 160042 ||||||| | ||| || |||||||| || || || || || | ||| ||| ||| Sbjct 2034884 CCGGCATCAGGCCCTTGC-TCTTGAGCCAGAAGATTGCAGCGAACGACCCGGAAAAGAAG 2034826 Query 160043 ATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG 160102 || ||||| ||||| || || || || || | | | |||| | || | |||| | Sbjct 2034825 ATACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCAAAGGTGGACTCCTTGTCGGAG 2034766 Query 160103 GTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATG 160147 ||||||| ||||| || |||||||| |||||| || ||| Sbjct 2034765 ATCCACCTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATG 2034721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154971392880