Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq12 125 2e-23 seq10 105 2e-17 seq9 95.1 3e-14 >seq12 Length=2267901 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || |||||||| || || || |||| ||||||||| | | || | ||||| Sbjct 994285 AGGACGAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCC 994226 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||| ||||||||||| ||||| || ||| ||| ||||| || Sbjct 994225 TCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCTGGAGGAATGCCTTCCTTATCT 994166 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 994165 TGAATCTTGCTCTTGACGTTGTCGATGGTGTCACTGGACTCAACCTCGAGAGTGATGGTC 994106 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || ||||| Sbjct 994105 TTGCCAGTCAGGGTCTTCACGAAGATTTG 994077 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||| || || ||||| || |||| ||||||||| || || Sbjct 994066 CGAAGACGGAGGACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTG 994007 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||| || || ||||||||||| |||||||| || ||| ||| ||| Sbjct 994006 CGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCT 993947 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 993946 TCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGA 993887 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || || ||||| || Sbjct 993886 GTGATGGTCTTGCCAGTCAGGGTCTTTACGAAAATCTG 993849 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || || || ||||| || ||||| |||| |||||| || | | || | || Sbjct 994517 TCTGAGAACGAGATGCAGAGTGGATTCCTTCTGGATGTTGTAATCTGAGAGTGTACGGCC 994458 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| |||||||| || |||||||| | || || |||||||| || || || Sbjct 994457 GTCTTCAAGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGGGATGCCCTCCTT 994398 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||||||||| ||| ||| || | ||||||| | ||| || || | ||||| Sbjct 994397 ATCCTGAATCTTCGTCTTGACGTTGTCAATTGTGTCTGAAGATTCAACCTCGAGTGTGAT 994338 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || || | ||||| ||||| ||||| Sbjct 994337 CGTCTTGCCAGTCAAGGTTTTGACAAAGATTTG 994305 >seq10 Length=3900288 Score = 105 bits (116), Expect = 2e-17 Identities = 175/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 167767 GGCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTG 167826 ||| |||||||||| ||| |||| |||| ||| | || ||| | | ||| | Sbjct 3135799 GGCATCCTTGTAGAGCATGTAGGGAGTACCCGTCTCAGTCTGGGCCTCAAGGATGGCATA 3135740 Query 167827 CCAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATA 167886 ||| || | ||||| || || || | | | || || |||||||||||||| || Sbjct 3135739 CCACAGCTTCTGGGCCTTGACTGTCTGACGGCCACGGCCCTCCTTTTCGTATCTCTCGTA 3135680 Query 167887 GAGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAA 167946 ||| || | ||| || | ||||| | ||| ||||||| |||||||| | || || || Sbjct 3135679 GAGCTCCTTGAAGTCGTCGCCGTACACATCGGCAAGACCTGGAGCTTCATGAGGGCAGAA 3135620 Query 167947 GAGACTCCAATTTCC--ATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATC 168004 ||| |||| |||| | ||||||| | || |||||| | ||||| |||||| ||| Sbjct 3135619 AAGAGTCCA--TTCCTGGTTCTTCTCGACACGCTCCATGAACAAGTCGGGAGTCCACATC 3135562 Query 168005 GCGTAGAACAA 168015 || |||||||| Sbjct 3135561 GCATAGAACAA 3135551 >seq9 Length=4529175 Score = 95.1 bits (104), Expect = 3e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| ||||| || ||||| ||||| |||| ||||||||| | | || Sbjct 1601673 CGGAGACGCAGGACCAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGCGTG 1601732 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || ||||| ||||||||||| || ||||||||||| ||| || ||| Sbjct 1601733 CGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATCCCT 1601792 Query 199529 TC 199530 || Sbjct 1601793 TC 1601794 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| |||||||| || |||| ||||| || || ||||| || ||||||| Sbjct 3501055 CCTTCTGGATATTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGTTGCTTGCCCGCGAAGA 3500996 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||||||||| || ||||| ||||| ||||| || || | Sbjct 3500995 TCAACCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGATTTGACATTGT 3500936 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | ||| || || | ||||| ||||| |||||||| || || || | Sbjct 3500935 CGATCGTGTCGGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 3500876 Query 199620 A 199620 | Sbjct 3500875 A 3500875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921252586541