Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016-
08-09] 23 sequences; 29,805,862 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq12 125 2e-23
seq10 105 2e-17
seq9 95.1 3e-14
>seq12
Length=2267901
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || |||||||| || || || |||| ||||||||| | | || | |||||
Sbjct 994285 AGGACGAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCC 994226
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||||||||| ||||||||||| ||||| || ||| ||| ||||| ||
Sbjct 994225 TCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCTGGAGGAATGCCTTCCTTATCT 994166
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| ||| |||| |||||| | | || || || | ||||| |||
Sbjct 994165 TGAATCTTGCTCTTGACGTTGTCGATGGTGTCACTGGACTCAACCTCGAGAGTGATGGTC 994106
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| || |||||
Sbjct 994105 TTGCCAGTCAGGGTCTTCACGAAGATTTG 994077
Score = 114 bits (126), Expect = 3e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| ||||| || || ||||| || |||| ||||||||| || ||
Sbjct 994066 CGAAGACGGAGGACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTG 994007
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||| || ||||| || || ||||||||||| |||||||| || ||| ||| |||
Sbjct 994006 CGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCT 993947
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || |||| |||||| | | || || || |
Sbjct 993946 TCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGA 993887
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || || || || ||||| ||
Sbjct 993886 GTGATGGTCTTGCCAGTCAGGGTCTTTACGAAAATCTG 993849
Score = 105 bits (116), Expect = 2e-17
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473
||| || || || || ||||| || ||||| |||| |||||| || | | || | ||
Sbjct 994517 TCTGAGAACGAGATGCAGAGTGGATTCCTTCTGGATGTTGTAATCTGAGAGTGTACGGCC 994458
Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533
||||| |||||||| || |||||||| | || || |||||||| || || ||
Sbjct 994457 GTCTTCAAGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGGGATGCCCTCCTT 994398
Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593
||||||||||| ||| ||| || | ||||||| | ||| || || | |||||
Sbjct 994397 ATCCTGAATCTTCGTCTTGACGTTGTCAATTGTGTCTGAAGATTCAACCTCGAGTGTGAT 994338
Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||| || || | ||||| ||||| |||||
Sbjct 994337 CGTCTTGCCAGTCAAGGTTTTGACAAAGATTTG 994305
>seq10
Length=3900288
Score = 105 bits (116), Expect = 2e-17
Identities = 175/251 (70%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 167767 GGCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTG 167826
||| |||||||||| ||| |||| |||| ||| | || ||| | | ||| |
Sbjct 3135799 GGCATCCTTGTAGAGCATGTAGGGAGTACCCGTCTCAGTCTGGGCCTCAAGGATGGCATA 3135740
Query 167827 CCAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCTTTTTCGTATCTCTCATA 167886
||| || | ||||| || || || | | | || || |||||||||||||| ||
Sbjct 3135739 CCACAGCTTCTGGGCCTTGACTGTCTGACGGCCACGGCCCTCCTTTTCGTATCTCTCGTA 3135680
Query 167887 GAGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAAAA 167946
||| || | ||| || | ||||| | ||| ||||||| |||||||| | || || ||
Sbjct 3135679 GAGCTCCTTGAAGTCGTCGCCGTACACATCGGCAAGACCTGGAGCTTCATGAGGGCAGAA 3135620
Query 167947 GAGACTCCAATTTCC--ATCGGTCTCGACCCTCTTCATGAAGAGGTCGGAAGTCCAAATC 168004
||| |||| |||| | ||||||| | || |||||| | ||||| |||||| |||
Sbjct 3135619 AAGAGTCCA--TTCCTGGTTCTTCTCGACACGCTCCATGAACAAGTCGGGAGTCCACATC 3135562
Query 168005 GCGTAGAACAA 168015
|| ||||||||
Sbjct 3135561 GCATAGAACAA 3135551
>seq9
Length=4529175
Score = 95.1 bits (104), Expect = 3e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | |||||| ||||| || ||||| ||||| |||| ||||||||| | | ||
Sbjct 1601673 CGGAGACGCAGGACCAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGCGTG 1601732
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || ||||| || ||||| ||||||||||| || ||||||||||| ||| || |||
Sbjct 1601733 CGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATCCCT 1601792
Query 199529 TC 199530
||
Sbjct 1601793 TC 1601794
Score = 84.2 bits (92), Expect = 5e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
|||| |||| |||||||| || |||| ||||| || || ||||| || |||||||
Sbjct 3501055 CCTTCTGGATATTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGTTGCTTGCCCGCGAAGA 3500996
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | |||||||||||||| || ||||| ||||| ||||| || || |
Sbjct 3500995 TCAACCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGATTTGACATTGT 3500936
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
||| ||||| | | ||| || || | ||||| ||||| |||||||| || || || |
Sbjct 3500935 CGATCGTGTCGGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 3500876
Query 199620 A 199620
|
Sbjct 3500875 A 3500875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921252586541
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |