Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq12 129 7e-25 seq9 114 1e-20 >seq12 Length=2267901 Score = 129 bits (142), Expect = 7e-25 Identities = 161/217 (74%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 || ||||| ||||| || |||||||| ||||| |||||||||||||| || || | || Sbjct 994742 CAGCACCAAGTGCAAGGTGCTCTCCTTCTGGATGTTGTAGTCGGATAGGGTCCGGCCATC 994683 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || ||||||||||| || |||| | ||||||||||| || | | ||||||||| Sbjct 994682 CTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTC 994623 Query 46501 CATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGA 46556 | |||||| |||| ||| | | | ||||| |||| || || |||| ||| | Sbjct 994622 CTGGATCTTGGATTTGA-CGTTGTCGATGGTGTCTGAGCTC---TCAACTTCCAGCGTAA 994567 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||| ||||| || || ||||| || ||||| Sbjct 994566 TAGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 994530 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| || ||||| ||||| ||||| || || || || || |||| || Sbjct 994510 ACGAGATGCAGAGTGGATTCCTTCTGGATGTTGTAATCTGAGAGTGTACGGCCGTCTTCA 994451 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| ||||| || || ||||| | || | || |||||| ||| Sbjct 994450 AGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGGGATGCCCTCCTTATCCTGA 994391 Query 46505 ATCTTCTTCTTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| |||||| ||| | || ||||| ||||| || || | ||||| || || Sbjct 994390 ATCTTCGTCTTGA-CGTTGTCAATTGTGTCTGAAGATTCAACCTCGAGTGTGATCGTCTT 994332 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| ||||| |||||||||||||| Sbjct 994331 GCCAGTCAAGGTTTTGACAAAGATTTGCAT 994302 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| ||||||||||| || ||||| | || ||||| ||||| ||||| || Sbjct 994264 TCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCAAAG 994205 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || ||||| || | || | || ||||| || ||||| |||||| ||| Sbjct 994204 ATGAGACGTTGCTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTGCTCTTGA-CGTT 994146 Query 46523 GCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || || || || || | |||||||| ||||| ||||| || || || Sbjct 994145 GTCGATGGTGTCACTGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCAC 994086 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 994085 GAAGATTTGCAT 994074 >seq9 Length=4529175 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46395 ATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGC 46454 |||| | | |||| ||||||||||||||| || || || | || ||||| ||||||| Sbjct 3501064 ATGTGCGCACCTTCTGGATATTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGTTGCTTGC 3501005 Query 46455 CGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCT 46514 | ||||| ||||| ||||||||||| | || | || ||||||||| |||||| | Sbjct 3501004 CCGCGAAGATCAACCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGATT 3500945 Query 46515 TGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCG 46574 ||| | | | ||||||| ||||| || || | |||||||| |||||||| || | Sbjct 3500944 TGACATTGTCGATCGTGTCGGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGG 3500885 Query 46575 TTTTAACAAAG 46585 | || || ||| Sbjct 3500884 TCTTGACGAAG 3500874 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| || ||||| |||| ||||| |||||||||||||| Sbjct 1601703 TCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAG 1601762 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||| |||||||||||||| || | | |||||||| Sbjct 1601763 ATCAGGCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTC 1601800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238237493960