Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq10 125 8e-24 >seq10 Length=3900288 Score = 125 bits (138), Expect = 8e-24 Identities = 274/401 (68%), Gaps = 11/401 (3%) Strand=Plus/Plus Query 159386 GAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGG 159445 |||| || || | ||||| | || || |||||||| || ||||| ||||| | |||| Sbjct 1516061 GAAAGGTCTGCCTCATACCTGTCTCTGCGCATGGAACAAACCCTGCGTCAGCTGCCATGG 1516120 Query 159446 CAGGGATGAAAGTTGTAGGTGTCAAGTGTGATG--ATGAT-GGCAACATAGACATCAAAG 159502 | || ||||| ||||| | ||||| ||| | || ||||| | ||| || ||| Sbjct 1516121 CGGGCATGAAGGTTGTTCCGCTGAAGTGCGATACCAAGACCGGCAATCTGGACGTCCAAG 1516180 Query 159503 ATCTAGAGAAGAAA-GCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATAT 159561 | || ||| ||| || | | | ||| ||| ||| | || ||||| || ||| Sbjct 1516181 ACCTCAAGAGTAAATGCGAGAA-GCATAAGGATGACCTGGCCGCCATCATGATCACCTAT 1516239 Query 159562 CCATCTACACAT--GGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATG 159619 || | ||| | ||||| || || | |||||| | | ||| |||| ||||| | Sbjct 1516240 CC--CAGCACGTTCGGTGTCTTCGAGCCGGCGATCAGAGAAGTTTGTGAGATCGTTCACG 1516297 Query 159620 AGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAA 159679 || | || ||||| || ||| | ||||| || ||||| ||||| || | || || | Sbjct 1516298 AGCACGGGGGTCAAGTGTATATGGATGGGGCGAATCTCAATGCTCAAATCGGCCT-GTGC 1516356 Query 159680 AACCATGTGACTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATT 159738 |||| || | ||| || || || || || ||||| || | || ||||| ||||| || Sbjct 1516357 AACCCTGGGGATATTGGCGCCGACGTCTGCCATCTGAATCTGCACAAGACTTTCTGCATC 1516416 Query 159739 CCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 || ||||| ||||||||||| || || || ||||| ||||| Sbjct 1516417 CCTCATGGTGGTGGAGGTCCCGGTGTTGGACCTATCGGTGT 1516457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588051030935280