Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq12 159 8e-34 seq10 118 2e-21 >seq12 Length=2267901 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 ||| | ||| || || |||||||| || || || || |||||||| | || || | || Sbjct 994517 TCTGAGAACGAGATGCAGAGTGGATTCCTTCTGGATGTTGTAATCTGAGAGTGTACGGCC 994458 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||||| ||||||||||| |||||||| | |||||||||||| || || ||||| || || Sbjct 994457 GTCTTCAAGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGGGATGCCCTCCTT 994398 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 || ||||| || ||||||||| ||||| ||||| ||| ||| || || || || | Sbjct 994397 ATCCTGAATCTTCGTCTTGACGTTGTCAATTGTGTCTGAAGATTCAACCTCGAGTGTGAT 994338 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| ||||| || || | |||||| Sbjct 994337 CGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 994302 Score = 145 bits (160), Expect = 2e-29 Identities = 160/211 (76%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||||| ||||| || || ||||| |||| ||| || | ||||| ||| Sbjct 994282 ACGAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCG 994223 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || ||||| || ||||| || ||||||||||||||||| || |||||| Sbjct 994222 AGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCTGGAGGAATGCCTTCCTTATCTTGA 994163 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || || ||||||||| || ||||||| | | || || || || || || | |||| Sbjct 994162 ATCTTGCTCTTGACGTTGTCGATGGTGTCACTGGAC--TCAACCTCGAGAGTGATGGTCT 994105 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || |||| || || ||||| | |||||| Sbjct 994104 TGCCAGTCAGGGTCTTCACGAAGATTTGCAT 994074 Score = 132 bits (146), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || ||||| ||| || || | ||||| ||| Sbjct 994054 ACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 993995 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| ||||| |||||||| || || || || || |||||||||||||| ||||| || Sbjct 993994 AGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 993935 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || || |||||| || || ||||||| | | || || || ||||| || | |||| Sbjct 993934 ATCTTGCTCTTGACATTGTCGATGGTGTCGCTGGAC--TCGACCTCAAGAGTGATGGTCT 993877 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || |||| || |||||||| | ||||| Sbjct 993876 TGCCAGTCAGGGTCTTTACGAAAATCTGCAT 993846 >seq10 Length=3900288 Score = 118 bits (130), Expect = 2e-21 Identities = 194/280 (69%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 ||||| || || |||||| |||| | |||||| || | || | | || ||| ||| Sbjct 3135554 TTCTATGCGATGTGGACTCCCGACTTGTTCATGGAGCGTGTCGAGAAGAACCAGGAATGG 3135613 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 | |||||||| || ||||||| || || |||| ||||| || || ||| ||| || Sbjct 3135614 ACTCTTTTCTGCCCTCATGAAGCTCCAGGTCTTGCCGATGTGTACGGCGACGACTTCAAG 3135673 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAA 160768 || || || ||||||||||| ||||| | | | || || |||||||| | Sbjct 3135674 GAGCTCTACGAGAGATACGAAAAGGAGGGCCGTGGCCGTCAGACAGTCAAGGCCCAGAAG 3135733 Query 160769 CTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAG 160828 |||||| || |||||||| ||||| ||| ||||| |||| || |||||| Sbjct 3135734 CTGTGGTATGCCATCCTTGAGGCCCAGACTGAGACGGGTACTCCCTACATGCTCTACAAG 3135793 Query 160829 GATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868 |||||| | | ||||| |||||||||||||| |||| Sbjct 3135794 GATGCCTGCAACAGGAAGAGCAACCAGAAGAACTTGGGAA 3135833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481273049641