Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq12 113 4e-19 seq9 100 2e-15 >seq12 Length=2267901 Score = 113 bits (124), Expect = 4e-19 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| || ||||| || || |||||| || ||||| || | || || | Sbjct 994292 GAGACGGAGGACGAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCG 994233 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| || ||||| ||||||||||| || || | ||||||||| |||||||| ||||| Sbjct 994232 ACCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCTGGAGGAATGCCTTC 994173 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAG 563434 ||||||||||| || || || || || || ||| || || | | ||||||| Sbjct 994172 CTTATCTTGAATCTTGCTCTTGACGTTGTCGATGGTGTCACTG-GACTCAACCTCGAGAG 994114 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | | || || ||||| || || || ||||| ||||||||| Sbjct 994113 TGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 994073 >seq9 Length=4529175 Score = 100 bits (110), Expect = 2e-15 Identities = 385/598 (64%), Gaps = 15/598 (3%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 |||||||| |||||||| || || || || || || | | | | ||| || Sbjct 150054 ATAGGTATCGATTTAGGTACTACCTACTCATGCGTAGGCATCTTCCGAGATGACCGCATT 149995 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || |||||||| |||||||| ||| |||| || || || | ||| | || || || Sbjct 149994 GAGATCATTGCCAACGATCAAGGCAACCGAACCACCCCCTCCTTTGTCGCCTTTACCGAC 149935 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 ||||| | | | |||||||||| || || | |||| | | || ||| || || Sbjct 149934 ACTGAGCGTCTCATTGGTGATGCCGCCAAGAACCAAGTCGCGATGAACCCTCAGAACACA 149875 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || ||||| || ||| | || || | | || |||| | ||||| || || Sbjct 149874 GTCTTCGATGCGAAGCGTCTGATCGGCCGGAAGTTCGCTGATCCCGAGGTTCAAGCCGAC 149815 Query 550235 ATGAAGCATTGGCCTTTCCAA---ATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 |||||||| | || ||| | || | || | || || || ||| | | Sbjct 149814 ATGAAGCACTTCCCCTTCAAGGTCATCGACAAGGGC---GGCAAGCCAGTCATTCAGGTC 149758 Query 550292 --ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | ||| |||| | ||||| || |||| ||| | ||||| || ||||| | | Sbjct 149757 GAATTCA--AAGGCGAAGAGAAACAGTTCACACCCGAAGAGATTTCGTCAATGGTCCTCA 149700 Query 550350 TGAAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATA 550408 || |||| | | || ||| ||| | | | ||| || | | || || | Sbjct 149699 CCAAGATGAGAGAGACTGCCGAGT-CATACCTGGGTGGCACCGTCAACAACGCCGTCGTC 149641 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || |||||||| || ||||| || || ||||| || ||||| || || || Sbjct 149640 ACTGTCCCCGCATATTTCAACGACTCGCAGCGCCAAGCCACCAAAGACGCAGGGTTGATC 149581 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || ||||| || ||||| ||||||||||| |||||||| || | || || || Sbjct 149580 GCCGGTCTCAATGTCCTCCGTATCATCAATGAACCCACTGCTGCCGCCATCGCCTACGGT 149521 Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA---TTGTGGAGGTA 550583 || || || | | ||| |||| ||||| |||||||| || | |||| |||| Sbjct 149520 CTCGACAAGAAGACTGAGGGTGAACGCAATGTCCTCATCTTCGACCTTGGTGGTGGTA 149463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294783656270