Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq10 316 4e-81 seq21 107 4e-18 >seq10 Length=3900288 Score = 316 bits (350), Expect = 4e-81 Identities = 1186/1841 (64%), Gaps = 54/1841 (3%) Strand=Plus/Minus Query 212577 GCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATG 212636 |||||| ||||||| || ||||||||||||||||| || ||| | |||||| | | Sbjct 3136803 GCAGCCATGGTGCGGAGGTAGTACATGCCGGTCTTGAGACCCATCTTCCAGCCAGCAAAG 3136744 Query 212637 TGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGG 212696 ||||| | ||||| ||| || | || | || | | |||| | | Sbjct 3136743 TGCATGGATGTGATTTTGCCCA------TGGTCGGTTCCTTCAAGTGG---------ATG 3136699 Query 212697 TTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCT 212756 ||||| || || |||||| ||||| | | | ||| || ||||| | | ||| Sbjct 3136698 TTCAGAGATTGGGACTGGTCGATGAAGGCACCTCGGTCTGCCGCCATTTGGAGGATTGTC 3136639 Query 212757 CTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGG 212816 | || || ||||| || |||||| | | | |||| ||| | |||| | |||| Sbjct 3136638 CGTTGACTGATTTCCCAGACAGTCTTGTACAACGCCTTGATGTCAGCAGGGATGTTGGGG 3136579 Query 212817 ATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGG 212876 |||||||| || || || | | | | | | ||||| || ||||||| Sbjct 3136578 ATGTTCTGAACTGAACCACCATCGGCGATAATACGGTTCTTCATGTTGTCTGACCAGAGG 3136519 Query 212877 CCCCTGGTCT-CCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAG 212935 || |||| ||||| ||| | ||| |||||||| | ||| || ||||| | || Sbjct 3136518 CCAA-GGTCGACCAGGTCCTTCAACAGCCATGGGTTGACGACCTGAAACTCACCAGCCAG 3136460 Query 212936 CACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAAT 212995 || | | || | ||| ||||| || ||||| | || |||||||| || ||||| Sbjct 3136459 GACACGGCGGGAATAGATGTTGGAAGTATATGGCTCAAAGCATTCGTTGTTGCCAAGAAT 3136400 Query 212996 CTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTC 213055 ||| | || || || ||||||||||| || || ||| ||| | || |||| | Sbjct 3136399 CTGCGAGGTTGACGCGGTAGGCATGGGAGCAACAAGCAGAGAGTTGCGAACCCCGTATTT 3136340 Query 213056 GCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCAC 213115 | | ||| | | || |||||||||| | | || ||| | || Sbjct 3136339 GGCAATGTCGGCCTTCAGTGAGTCCCAGTCCCACAGGTCGGA-AGGAG--------TAAC 3136289 Query 213116 GTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTA 213175 ||||||||||| | || | |||||| | || ||||| |||| ||| | || Sbjct 3136288 ATTCCACATGTCGTATTGGAGAGTGCCTTGGGAGACTGGGCTCCCCTCGTATGTTTCATA 3136229 Query 213176 GGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTC 213235 || ||| |||||| | || |||||||| || || || ||||||| ||| ||||| || Sbjct 3136228 GGCGCCTTGCTCCCTTGCAAGCTCGCATGAAGCAGTGAGAGCAGCGTGGTAAATGGTCTC 3136169 Query 213236 AAATATCTCCCTGTTGAGCTTCTTG-GCCTCTGGGGACGTGAAGGGCATCATCATGCGTT 213294 ||| |||| ||||||| || | | ||||| || || ||||||| || | Sbjct 3136168 AAAGATCTGGATGTTGAG-TTGTCGAGCCTCCGGAGAGTCAAAGGGCAGACGCAGGGCAA 3136110 Query 213295 GGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACT 213354 |||| ||||||| || || || || || | || || || | ||||| || ||| || Sbjct 3136109 GGAATGCATCAGCAAGACCTTGAACACCAAGACCAATAGGGCGGTGTCGCATGTTGCTCT 3136050 Query 213355 TGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGG 213414 | | ||| || || || ||||| ||||||||||||||| | |||||||| Sbjct 3136049 TCTTGGCCTCTGGCACAGGATAGTAGTTGATGTCGATGATCTTGTTCAAATTGCGGGTCA 3135990 Query 213415 CCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAA 213474 |||||| |||||| | | ||| || | || || | || | | |||| Sbjct 3135989 CCACTTGGGTGACCTCGTGGAGGCGGCCGAAGTCATACTCGCCACGGCCTTGGTCGACAA 3135930 Query 213475 ACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACT 213534 | || || || | ||||| ||||| || || ||||| | | | ||||||||| Sbjct 3135929 AGGTTGGAAGAGCCAGAGAAGCCAGATTGCAGACAGCAACCTCATCCGGGGCTGTGTACT 3135870 Query 213535 CCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACT 213594 | | ||||||||||| || ||| || ||| ||||| |||| ||||| ||||| || Sbjct 3135869 CGACAATCTCGGTGCAGAGATTGGAGCTTCGAATGGTTCCCAAGTTCTTCTGGTTGCTCT 3135810 Query 213595 TTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCA 213654 | |||| | ||||||||||||||||||||| | || ||||| ||||| | | | Sbjct 3135809 TCCTGTTGCAGGCATCCTTGTAGAGCATGTAGGGAGTACCCGTCTCAGTCTGGGCCTCAA 3135750 Query 213655 GTATCTGGC--TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC 213712 | | |||| ||| || | | |||||||| | | ||||| || ||| | | | Sbjct 3135749 GGA--TGGCATACCACAGCTTCTGGGCCTTGA----CTGTCTGACGGCCACGGCCCT--C 3135698 Query 213713 C---TCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGG 213769 | ||||| ||||||||||| ||||| |||| ||| | || | | || || || Sbjct 3135697 CTTTTCGTATCTCTCGTAGAGCTCCTTGAAGTCGTCGCCGTACACATCGGCAAGACCTGG 3135638 Query 213770 A-CAGGATGCGGGACACATGAGGCTCCAGTCCCCG-TCATCTCTGACTCTCTGCATGAAC 213827 | | ||| ||| || | || |||| ||| | || |||| ||| | || ||||||| Sbjct 3135637 AGCTTCATGAGGG-CAGAAAAGAGTCCATTCCTGGTTCTTCTC-GACACGCTCCATGAAC 3135580 Query 213828 AGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAG 213887 | ||| || ||||| ||| ||||| ||| | | || | || ||| || | Sbjct 3135579 AAGTCGGGAGTCCACATCGCATAGAACAAGTCACGAGCCCGGATTTCCTCCTTGCCGTGG 3135520 Query 213888 TTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCA 213947 || || | || | | || ||||||| || |||||||| ||||||| ||||||||| Sbjct 3135519 TTCTTTCTTAGGTTCAAGAACTCAAAGACATCGGCGTGCCAGGGCTCCAAGTAGATGGCG 3135460 Query 213948 AAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATG 214004 || ||||||| || | |||||||||||||| || | |||| | ||||| | Sbjct 3135459 AAAGCGCCCGGTCGCTTATTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTATTGAACACA 3135400 Query 214005 CGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAG 214064 || || | ||| | || || || || ||| |||||||| || ||||| || || | Sbjct 3135399 CGGAGCATGGGAATGAGGCCATTTGAGGTTCCATTGGTTCCTGCAATATAGGATCCCGTT 3135340 Query 214065 GCCCTCAGG--TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGC 214122 || | | | || ||| ||| || || ||||| || ||||||||||||||| | Sbjct 3135339 GCACGAATGCAGTGAGCAT--TGAGGCCAATACCACCAGCTGTCTTGGAGATCATGGCAC 3135282 Query 214123 AGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGC 214182 | | | | ||| || ||| || | |||||||| || | | || | |||||||| Sbjct 3135281 ACGTCTTGAGAGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGC 3135222 Query 214183 AGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCA 214242 || || ||||||||| | || || | ||||| || || ||| ||||| | | Sbjct 3135221 AGGAGGATAGCTGGGGCTGTGGCGTTCCCGCATTGAAGAGTGTCGGGGATGCATGAGTGA 3135162 Query 214243 TAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGA 214302 |||| | || | ||| |||| ||||| | | | || |||| ||||| Sbjct 3135161 AGCACTTCTGGGACATGAGATTGTATGTCTCGATGGCCTTCTCAATATCGTCGCCGTGGA 3135102 Query 214303 TCTGTAGAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCC 214361 | | ||| ||| | ||| | ||| ||||| || | || | | ||| | | Sbjct 3135101 TGCCGACAGC-CACACGCATGATCATATGCTGTGGTCGTTCGGCGACTTGCTTGCCGATC 3135043 Query 214362 TTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTA 214402 ||||||||||| || ||||| ||||| || |||||||| Sbjct 3135042 TTGAGCAGGTATGATTTCTCCAACGTCTTAAAGCCAAAGTA 3135002 >seq21 Length=3175452 Score = 107 bits (118), Expect = 4e-18 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 48125 AGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAG 48184 |||| ||| ||||| || |||||| ||| ||||| || |||||| | || || ||| Sbjct 2034951 AGCAGGCATGCAAAATCGGTGTGCATGCCCTCGTCACGAGAGATGAGTTCATTTGAAAAG 2034892 Query 48185 CAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAG 48244 || || ||||| | ||| | ||||||||||| ||||| ||||| || || || Sbjct 2034891 GTAAGGCCCGGCATCAGGCCCTTGCTCTTGAGCCAGAAGATTGCAGCGAACGACCCGGAA 2034832 Query 48245 AAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTG 48304 |||||||| ||||| || || ||||| || || | | | || | | | |||| Sbjct 2034831 AAGAAGATACCCTCGACGGCTGCGAAAGCAACCAGTCGTTGAGCAAAGGTGGACTCCTTG 2034772 Query 48305 TCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATG 48364 || |||||||| || |||||||| |||||||| |||||| || || || || || Sbjct 2034771 TCGGAGATCCACCTCAGAGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCGATA 2034712 Query 48365 GC 48366 || Sbjct 2034711 GC 2034710 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 48462 ACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGAT 48521 |||| |||||| | |||||| ||||||||||| | || | ||||||||||| Sbjct 2034562 ACCCATAGAAGCAGCGTGCCTCAGGGACCTGCACTTCGGCACTAAAACGCTCCAGCAGAT 2034503 Query 48522 TCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGC 48581 |||| ||||| || || ||||||||||| ||||||||||| || || | ||| | || Sbjct 2034502 TCTCGTTGACGATACCGTCTGAAGCAGCGAAGAAGGCAAGAACGTGGGAGACGAAGTAGC 2034443 Query 48582 GCTC 48585 |||| Sbjct 2034442 GCTC 2034439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532532184320