Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10 134 4e-26 seq11 107 6e-18 >seq10 Length=3900288 Score = 134 bits (148), Expect = 4e-26 Identities = 555/868 (64%), Gaps = 17/868 (2%) Strand=Plus/Minus Query 155582 AAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAAT 155641 |||| | | ||| |||||||| || || ||| ||| | | | |||| || ||||| Sbjct 3135922 AAGAGCCAGAGAAGCCAGATTGCAGACAGCAACCTCATCCGGGGCTGTGTACTCGACAAT 3135863 Query 155642 CTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTT 155701 ||| ||| || || || || ||||| || || ||||||||||| || ||||| Sbjct 3135862 CTCGGTGCAGAGATTGGAGCTTCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTT 3135803 Query 155702 ACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTT 155761 || ||||||||||| || ||||| || || || ||||| |||| || || || || Sbjct 3135802 GCAGGCATCCTTGTAGAGCATGTAGGGAGTACCCGTCTCAGTCTGGGCCTCAAGGATGGC 3135743 Query 155762 TAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCAT 155821 ||| || | |||| || | | || | | ||| ||| || ||| || Sbjct 3135742 ATACCACAGCTTCTGGGCCTTGACTGTCTGACGGCCACGGCCCTCCTTTTCGTATCTCTC 3135683 Query 155822 ATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCA 155881 || ||| | | || || ||||| ||| || || || | || ||||| Sbjct 3135682 GTAGAGCTCCTTGAAGTCGTCGCCGTACACATCGGCAAGACCTGGAGCTTCATGAGGGCA 3135623 Query 155882 AAACAGCGACCAAATT-----TTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936 || || | ||| || || || ||| |||||||||| || | || | | Sbjct 3135622 GAAAAGAGTCCA--TTCCTGGTTCTTCTCGA---CACGCTCCATGAACAAGTCGGGAGTC 3135568 Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGC 155996 || || |||||||| | ||| | ||| ||||| | |||||| ||||| | ||| Sbjct 3135567 CACATCGCATAGAACAAGTCACGAGCCCGGATTTCCTCCTTGCCGTGGTTCTTTCTTAGG 3135508 Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA-CTACCATT 156055 | ||||| || | ||| | || ||||||| || || || ||| | || | Sbjct 3135507 TTCAAGAACTCAAAGACATCGGCGTGCCAGGGCTCCAAGTAGATGGCGAAAGCGCCCGGT 3135448 Query 156056 CC--TCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113 | | ||||| ||||| || || || || || || |||||||| |||| ||||| ||| Sbjct 3135447 CGCTTATTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTATTGAACACACGGAGCATGGGA 3135388 Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTA 156173 || | ||||| || || ||||||||||| ||||| || || | || |||| Sbjct 3135387 ATGAGGCCATTTGAGGTTCCATTGGTTCCTGCAATATAGGATCCCGTTGCACGAATGCAG 3135328 Query 156174 TGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTA 156233 ||| || || ||||||||||| | || || || || || ||| | ||| Sbjct 3135327 TGAGCATTGAGGCCAATACCACCAGCTGTCTTGGAGATCATGGCACACGTCTTGAGAGTG 3135268 Query 156234 TTGAAAATACCTTCAATAGAATCATCTTCCA--TTGATAGTAGATAGCACGAACTTAATT 156291 | | | ||||| || || || || | || | ||| ||| |||| || || | Sbjct 3135267 TCGTAGATACCCTCGATGCTGTCCTCCTTCATGTCGAT-CAAGA-AGCAGGAGGATAGCT 3135210 Query 156292 GAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAG 156351 | || |||| ||||| || ||||| ||||| || | ||||||| | || |||| | | Sbjct 3135209 GGGGCTGTGGCGTTCCCGCATTGAAGAGTGTCGGGGATGCATGAGTGAAGCACTTCTGGG 3135150 Query 156352 ACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGA 156411 |||| || ||||||||| | |||||||| || ||||| || | || || | Sbjct 3135149 ACATGAGATTGTATGTCTCGATGGCCTTCTCAATATCGTCGCCGTGGATGCCGACAGCCA 3135090 Query 156412 CCCTCATCCACATATGCTGAGGACGCTC 156439 | | ||| ||||||||| || || || Sbjct 3135089 CACGCATGATCATATGCTGTGGTCGTTC 3135062 >seq11 Length=3585204 Score = 107 bits (118), Expect = 6e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| || ||||| | | | ||| || ||||| | || || ||||| ||| ||| Sbjct 226977 ACATACGTGGACACGAAACGGATCCGACACGTCAAAGAGGCGTTCCTTGAGGAACGAAGA 227036 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||| ||||||| |||||| || || |||||||| || ||||| || | |||||| || || Sbjct 227037 TGCTCCGTGTGCAATCATGCAGTCGCGCTCCATCTCTCCGAACCGTAAACCACCGTCCCG 227096 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATG 251603 || | ||||||| |||| || || || || | |||| ||| || || || Sbjct 227097 CGCGCGACCCTCGACAGGTTGGCGCGTCAGGATCTGTGTAGGGCCGCGGGCACGAGAGTG 227156 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 |||||| | ||||| ||| | |||||||||||| ||| |||||| | ||| Sbjct 227157 GATCTTATCGTCGACCATGTGCCTTAGACGCTGGTAGTATGTGGGACCCAGGAA 227210 Score = 84.2 bits (92), Expect = 6e-11 Identities = 199/299 (67%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||| | | ||||| | ||||| ||||| || || || | || || |||||| Sbjct 243462 TCTTCGAGAGCCTTGACGAGTCGACGTTGAATGTACCCGGTCTCGGCAGTCTTGACAGCT 243403 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTC--TTCCGGTCGTA 302689 || ||||| ||||| |||||||| |||| || |||||||| | ||| | |||| | Sbjct 243402 GTGTCAATGAGACCTTCACGACCAGCCATGGCGTGGAAGAAGAACTCCGTGGGGGTC--A 243345 Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG 302749 | || | || ||||| ||||||||||||| | || || |||| || ||| | Sbjct 243344 GACCACGAAGGTAGGAGTTCTCAACGAAACCTCTCGAGGGGGCAGAATAATCATCCTTCG 243285 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 ||||||| || || | | | || | ||| | || ||||| || || || || || Sbjct 243284 TAAAGTGAGGAAGACTGCGATACTTGAACCCGAAGGGAATACGTTTGCCTTCCACAGCCT 243225 Query 302810 GCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCA 302868 | || || | | | ||||||| | || || | | |||||||||||||||| Sbjct 243224 GTTGACCAACGATAGCCGTCATCTGAGCGATGTTGATAGTCGAGCCCTTGGAGCCAGCA 243166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817166273751