Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11 143 3e-28 seq10 122 1e-21 seq21 118 1e-20 seq13 91.5 2e-12 seq9 89.7 6e-12 >seq11 Length=3585204 Score = 143 bits (158), Expect = 3e-28 Identities = 109/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| | ||||||||||||||||| ||||||||||| |||| || ||| |||| Sbjct 2893739 CTGTTCGAGATCATCCTCGCCGCCAACTATCTCGACATCAAAGCTCTTCTAGATGTTGGC 2893798 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| |||| || |||||||||||||| |||||||| ||||||||||| || ||||| Sbjct 2893799 TGCAAGACTGTCGCGAACATGATCAAGGGGAAGTCGCCTGAGGAGATCCGGAAAACCTTC 2893858 Query 1592288 AACATCAAG 1592296 |||||| || Sbjct 2893859 AACATCCAG 2893867 >seq10 Length=3900288 Score = 122 bits (134), Expect = 1e-21 Identities = 202/292 (69%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||||||||||||||| ||||||| || || || ||||||||||| | |||||| || Sbjct 3135436 GCCCTGGTCGACGTAGCGGGCCGTGTTATTGAACACACGGAGCATGGGAATGAGGCCATT 3135377 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || || ||||| || || | |||| || | || || | ||| || | Sbjct 3135376 TGAGGTTCCATTGGTTCCTGCAATATAGGATCCCGTTGCACGAATGCAGTGAGCATTGAG 3135317 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||| || || || || | ||||||||| | || ||| ||||| ||||||||||| || Sbjct 3135316 GCCAATACCACCAGCTGTCTTGGAGATCATGGCACACGTCTTGAGAGTGTCGTAGATACC 3135257 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 |||||| ||| |||||||||| | | ||||| || || || || || | ||| Sbjct 3135256 CTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCAGGAGGATAGCTGGGGCTGTGGCGT 3135197 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353 || || |||||||| || || | || ||||| ||| | | |||||| Sbjct 3135196 TCCCGCATTGAAGAGTGTCGGGGATGCATGAGTGAAGCACTTCTGGGACATG 3135145 Score = 89.7 bits (98), Expect = 6e-12 Identities = 116/158 (73%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 || ||||| |||||||| ||||| |||||| |||||| ||| ||||| || || Sbjct 3126251 GATAGCATTGGCGGCACAGTGACCTGCGTGATTCGCAATTGTCCGATTGGCCTGGGAGAA 3126310 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 |||||||| |||||| | ||||| | | || || |||||| || || || || || Sbjct 3126311 CCGTGCTTCGACAAGTTGGAGGCAGAATTGGCACATGCCATGTTGAGCATACCTGCTACA 3126370 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTTT--GCGGGTGCG 19202 || || ||||||||||| | | ||||| | ||||||| Sbjct 3126371 AAAGGGTTCGAGATTGG-ATCAGGTTTCGGTGGGTGCG 3126407 Score = 89.7 bits (98), Expect = 6e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1628464 GTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTG 1628523 ||||||| || || || | ||| || |||||| | ||||||||||||||||||||| | Sbjct 3135570 GTCCACATCGCATAGAACAAGTCACGAGCCCGGATTTCCTCCTTGCCGTGGTTCTTTCTT 3135511 Query 1628524 AGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCC 1628583 |||| | | || | | ||||||||||| ||||||| |||| ||| || |||||| Sbjct 3135510 AGGTTCAAGAACTCAAAGACATCGGCGTGCCAGGGCTCCAAGTAGATGGCGAAAGCGCCC 3135451 Query 1628584 TTGCGCTTGCCGCCGCC 1628600 ||||| |||||| Sbjct 3135450 GGTCGCTTATTGCCGCC 3135434 >seq21 Length=3175452 Score = 118 bits (130), Expect = 1e-20 Identities = 200/288 (69%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||| | ||| || ||||| ||||| ||||| ||||| || Sbjct 2034924 CCCTCGTCACGAGAGATGAGTTCATTTGAAAAGGTAAGGCCCGGCATCAGGCCCTTGCTC 2034865 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||| || ||| || || || ||||| ||||||||||| || || Sbjct 2034864 TTGAGCCAGAAGATTGCAGCGAACGACCCGGAAAAGAAGATACCCTCGACGGCTGCGAAA 2034805 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGCC 869356 | | || || | ||||||||| || |||||||| | |||||| ||| ||| Sbjct 2034804 GCAACCAGTCGTTGAGCAAAGGTG--GA----CTCCTTGTCGGAGATCCACCTCAGAGCC 2034751 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 ||||||||||| || | | | || | |||||||| || || |||| ||| Sbjct 2034750 CAGTCGGCCTTCTTGCGGATGCAGGGGATGGTGTCGATAGCATCGAACAGGTATGTCTTC 2034691 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 || |||||||| || ||||||||||| ||||| ||||| ||||| Sbjct 2034690 TCTTTGGGGTCCTTCACGTAGGTGTCGATGAGGAGTGAATACATCTCC 2034643 >seq13 Length=1976773 Score = 91.5 bits (100), Expect = 2e-12 Identities = 198/292 (68%), Gaps = 11/292 (4%) Strand=Plus/Plus Query 1572460 TTCGATGAGCAACTGGGCGATGCGCGCCTCGCCCTGGACAACGTGG---TCGGCGTCGGT 1572516 ||||| | |||||| |||||||| ||||||| | | || | || || |||| Sbjct 1254614 TTCGAGCACCAACTGCGCGATGCGG---TCGCCCTTGTCGACCCGAAAATCCGCCTCGGC 1254670 Query 1572517 GTGGTTGAAGAGCACGACGCCCACCTCGCCGCGATAGTCGGCATCGATGACGCCTGCGCC 1572576 ||||||||| |||| || ||||||||||| |||||||| ||||| ||||| ||||| Sbjct 1254671 GTGGTTGAACAGCAACACCTTGACCTCGCCGCGGTAGTCGGCGTCGATCACGCCGGCGCC 1254730 Query 1572577 GACGTCGATG---CCCCTGACGGCCAGGGACGAGCGCGGCGCCACGCGCCCATAGTAGCC 1572633 ||||||| || | |||||| ||| |||||||| | || || || ||| Sbjct 1254731 CGTGTCGATGAAATGTTTGGCCGCCAGGCCCGACCGCGGCGCGATCCGGCCGTACGTGCC 1254790 Query 1572634 CGCGGGTATGGCCACGGCCAGACCGGTGCGCACCTGCGCGCGGCCGCGTGCCGGCACGGT 1572693 | |||| |||| | | || | || ||| | || ||| ||||| || | ||| Sbjct 1254791 CTCGGGCGTGGCGATCGAGAGCTCCGTCGACACGAGAGCCTTGCCCCGTGCGGGGATGGT 1254850 Query 1572694 CGTC-GTCCCGACAGCCCACAGATCGTATCCGGCGGCGCCTGGCGTGCCGCG 1572744 |||| || || | || |||| ||||| || || ||| | || |||||| Sbjct 1254851 CGTCGGTTTCG-CGGCGTACAGGTCGTACCCCGCCGCGAAGGCCGAGCCGCG 1254901 >seq9 Length=4529175 Score = 89.7 bits (98), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1852498 GTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAG 1852557 |||||||||| | |||| | |||||| | ||||||||||||| |||||| || | || Sbjct 4061293 GTTGTCGAGGAAGCCGTGGATGTCGGCCAGCAGGATCTTGACCCTACAGCCCGCTCGTAG 4061234 Query 1852558 AAAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGC 1852617 |||| || | || | |||||||| ||||| || ||| || ||||||| | || Sbjct 4061233 GAAGTGTGCAATCTTCATCATGGGCACGAAGTAACCGCAGTGTGGTCTGCCCGTGGTGGC 4061174 Query 1852618 CGTGCCCCAATATATGATCAGGGG 1852641 || ||||| || |||| |||||| Sbjct 4061173 TGTTCCCCAGTAAATGACCAGGGG 4061150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137312512291