Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq21 136 6e-26 seq11 120 5e-21 seq10 116 6e-20 >seq21 Length=3175452 Score = 136 bits (150), Expect = 6e-26 Identities = 220/316 (70%), Gaps = 3/316 (1%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| ||| | ||| || |||| ||||| ||||| ||||| || Sbjct 2034924 CCCTCGTCACGAGAGATGAGTTCATTTGAAAAGGTAAGGCCCGGCATCAGGCCCTTGCTC 2034865 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||| ||| ||| || || || ||||| ||||||||||| || || Sbjct 2034864 TTGAGCCAGAAGATTGCAGCGAACGACCCGGAAAAGAAGATACCCTCGACGGCTGCGAAA 2034805 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | || || || | ||||| ||| | ||| | | ||||||| ||| ||||| Sbjct 2034804 GCAACCAGTCGTTGAGCAAAGGTGGACT---CCTTGTCGGAGATCCACCTCAGAGCCCAG 2034748 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| || | | |||| | |||||||| || || |||| |||||| Sbjct 2034747 TCGGCCTTCTTGCGGATGCAGGGGATGGTGTCGATAGCATCGAACAGGTATGTCTTCTCT 2034688 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 |||||||| |||||||||||||||||||| || || |||| ||||||||||| || Sbjct 2034687 TTGGGGTCCTTCACGTAGGTGTCGATGAGGAGTGAATACATCTCCGAGTGGATGTTCTCC 2034628 Query 794641 ATGGCGATCTGGAAGC 794656 || || ||| |||| Sbjct 2034627 ATCATGACCTGAAAGC 2034612 >seq11 Length=3585204 Score = 120 bits (132), Expect = 5e-21 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 || || ||| | ||||||||||||||||| ||||||||||| | || || ||| | || Sbjct 2893739 CTGTTCGAGATCATCCTCGCCGCCAACTATCTCGACATCAAAGCTCTTCTAGATGTTGGC 2893798 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 |||||||| || || ||| | |||||||| |||||||| ||||| ||||| || ||||| Sbjct 2893799 TGCAAGACTGTCGCGAACATGATCAAGGGGAAGTCGCCTGAGGAGATCCGGAAAACCTTC 2893858 Query 2035749 AACATCAAG 2035757 |||||| || Sbjct 2893859 AACATCCAG 2893867 >seq10 Length=3900288 Score = 116 bits (128), Expect = 6e-20 Identities = 201/292 (69%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| ||||| ||||||| || || || ||||||||||| | ||||| || Sbjct 3135436 GCCCTGGTCGACGTAGCGGGCCGTGTTATTGAACACACGGAGCATGGGAATGAGGCCATT 3135377 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 || || ||||| || || | |||| |||| || || | ||| || | Sbjct 3135376 TGAGGTTCCATTGGTTCCTGCAATATAGGATCCCGTTGCACGAATGCAGTGAGCATTGAG 3135317 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 ||| || || || || | ||||||||| | || ||| | || || || |||||||| || Sbjct 3135316 GCCAATACCACCAGCTGTCTTGGAGATCATGGCACACGTCTTGAGAGTGTCGTAGATACC 3135257 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 |||||| ||| |||||||||| | || ||||| || || || || | | ||| Sbjct 3135256 CTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCAGGAGGATAGCTGGGGCTGTGGCGT 3135197 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATG 2073828 || ||||||||||| || || | || ||| | ||| ||||||||| Sbjct 3135196 TCCCGCATTGAAGAGTGTCGGGGATGCATGAGTGAAGCACTTCTGGGACATG 3135145 Score = 107 bits (118), Expect = 3e-17 Identities = 291/446 (65%), Gaps = 14/446 (3%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTT 2071631 ||| ||| | ||||||||| || |||| | ||| |||| |||| ||||| |||||| Sbjct 3135872 ACTCGACAATCTCGGTGCAGAGATTGGAG--CTTCGAATGGTTCCCAAGTTCTTCTGGTT 3135815 Query 2071632 GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGC 2071691 ||| || |||| ||| ||||||| ||||||||||| | ||||||||| |||| || Sbjct 3135814 GCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGTAGGGAGTACCCGTCTCAGTCTGGGC 3135755 Query 2071692 CGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCG----CGGCCCT 2071747 | | |||||| |||| | || |||| || || || ||||||| Sbjct 3135754 CTCAAGGATGGCATACCACA----GCTTCTGGGCCTTGACTGTCTGACGGCCACGGCCCT 3135699 Query 2071748 NNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCAC-TCGTGCAGGCCG 2071806 |||| | | ||| || |||||| ||| ||| || || Sbjct 3135698 CCTTTTCGTATCTCTCGTAGAGCTCCTTGAAGTCGTCGCCGTA-CACATCGGCAAGACCT 3135640 Query 2071807 GGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAAC 2071866 || || || ||||| || || | ||| || | || | || || ||| ||| Sbjct 3135639 GGAGCTTCATGAGGGCAGAAAAGAGTCCATTCCTGGTTCTTCTCGACACGCTCCATGAAC 3135580 Query 2071867 AGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGG 2071926 | |||| ||||||| | || || | || || |||||| | ||||||||||||||| Sbjct 3135579 AAGTCGGGAGTCCACATCGCATAGAACAAGTCACGAGCCCGGATTTCCTCCTTGCCGTGG 3135520 Query 2071927 TTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCA 2071986 |||||| | |||| | | || | || ||||||||||| ||||||| |||| ||| Sbjct 3135519 TTCTTTCTTAGGTTCAAGAACTCAAAGACATCGGCGTGCCAGGGCTCCAAGTAGATGGCG 3135460 Query 2071987 AAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || |||||| ||||| |||||| Sbjct 3135459 AAAGCGCCCGGTCGCTTATTGCCGCC 3135434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916243953385097