Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq12 140 2e-28 seq9 104 2e-17 >seq12 Length=2267901 Score = 140 bits (154), Expect = 2e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| |||| ||| | ||||||||||||||| ||||| ||||| |||||| | || || Sbjct 994744 CTCAGCACCAAGTGCAAGGTGCTCTCCTTCTGGATGTTGTAGTCGGATAGGGTCCGGCCA 994685 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || |||||||| ||||| |||||||||| |||||||| | || | ||||||||| Sbjct 994684 TCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTG 994625 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || ||||||| | || | || | ||| || || | || || Sbjct 994624 TCCTGGATCTTGGATTTGACGTTGTCGATGGTGTCTGAGCTCTCAACTTCCAGCGTAATA 994565 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || |||||||| ||||| |||||||| Sbjct 994564 GTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 994530 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| || ||||| ||||| ||||| || ||| |||| |||| Sbjct 994285 AGGACGAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCC 994226 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||||||||| ||||| || |||||||| ||| | || | || ||||| || Sbjct 994225 TCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCTGGAGGAATGCCTTCCTTATCT 994166 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | ||| ||| ||| || || | || |||||| Sbjct 994165 TGAATCTTGCTCTTGACGTTGTCGATGGTGTCACTGGACTCAACCTCGAGAGTGATGGTC 994106 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| || ||||| ||||| Sbjct 994105 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 994074 Score = 109 bits (120), Expect = 4e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||| ||||| ||||| ||||| ||| |||| |||| Sbjct 994057 AGGACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 993998 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || |||||||| || || ||||| || | || | || |||||||| Sbjct 993997 TCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCC 993938 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || ||| |||||| |||| || || Sbjct 993937 TGGATCTTGCTCTTGAC--AT--TGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGAT 993882 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || ||||||||||| || |||||||| Sbjct 993881 GGTCTTGCCAGTCAGGGTCTTTACGAAAATCTGCAT 993846 >seq9 Length=4529175 Score = 104 bits (114), Expect = 2e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||||| ||| |||||||| ||||| ||||| || || |||| | || Sbjct 1601681 CAGGACCAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTC 1601740 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || |||||||| |||||||||||||| || |||||||| | || | ||| |||||||| Sbjct 1601741 TTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATCCCTTCCTTGTC 1601800 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 34781 GTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCG 34840 |||| | ||||||| || || ||||| || | || |||| || |||||||| || Sbjct 3501062 GTGCGCACCTTCTGGATATTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGTTGCTTGCCC 3501003 Query 34841 GCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTG 34900 |||||||||| || |||||||| | || | || |||||||| | || || |||| Sbjct 3501002 GCGAAGATCAACCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGATTTG 3500943 Query 34901 ACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960 || | |||| || || ||||| || | ||| |||||||| |||||||||||| Sbjct 3500942 ACATTGTCGATCGTGTCGGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTC 3500883 Query 34961 TTTACAAAG 34969 || || ||| Sbjct 3500882 TTGACGAAG 3500874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692708704237