Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq12 100 2e-16 >seq12 Length=2267901 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | || | ||| |||||| ||||| || |||||||| ||||| Sbjct 994301 ACCACCACGGAGACGGAGGACGAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGA 994242 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | ||| ||||||||||| || | ||| ||||||||| | || Sbjct 994241 AAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCTGGAGG 994182 Query 33642 CACACCTTCTTTGTCGGCAAT-TTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | ||||| || || ||| || || || || | ||| | |||||| || || || Sbjct 994181 AATGCCTTCCTTATCTTGAATCTTGCTCTT--GACGTTGTCGATGGTGTCACTGGACTCA 994124 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| || || || || | || || || ||||| |||||| Sbjct 994123 ACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 994073 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||||| || |||||| || |||||||| ||| || ||||| | || || Sbjct 994054 ACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 993995 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGT-CGGC 33659 | ||||| || || || || | ||||||||||| | || | ||||| |||| | | Sbjct 993994 AGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 993935 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 | || || || |||| ||| | ||||||||| || || || |||| ||||| || | Sbjct 993934 ATCTTGCTCTT--GACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCT 993877 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || ||||| || |||||||| Sbjct 993876 TGCCAGTCAGGGTCTTTACGAAAATCTGCAT 993846 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||| | | || | ||| |||||| || || || ||||||||||| || Sbjct 994529 ACCACCACGCAATCTGAGAACGAGATGCAGAGTGGATTCCTTCTGGATGTTGTAATCTGA 994470 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||| || |||| || | || || || || || ||||| || || || || | || Sbjct 994469 GAGTGTACGGCCGTCTTCAAGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGG 994410 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||| ||| || | || | ||| | ||||| ||||| | Sbjct 994409 GATGCCCTCCTTATCCTGAATCTTC-GTCTTGACGTTGTCAATTGTGTCTGAAGATTCAA 994351 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||||| || || || || ||||| |||||||| |||||| Sbjct 994350 CCTCGAGTGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCATA 994301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703907860160