Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq10 179 4e-40 seq12 120 3e-22 >seq10 Length=3900288 Score = 179 bits (198), Expect = 4e-40 Identities = 623/960 (65%), Gaps = 29/960 (3%) Strand=Plus/Minus Query 147465 AGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCA 147524 ||| |||||||||||||| || ||| || | | | |||||| || || |||| ||| Sbjct 3135913 AGAAGCCAGATTGCAGACAGCAACCTCATCCGGGGCTGTGTACTCGACAATCTCGGTGCA 3135854 Query 147525 CAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTC 147584 || ||| || | ||| |||||| || | ||| ||||| |||| ||||| || || Sbjct 3135853 GAGATTGGAGCTTCGAATGGTTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATC 3135794 Query 147585 TTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATG 147641 ||| |||||||||| || || ||||| || | |||| ||| | ||| Sbjct 3135793 CTTGTAGAGCATGTAGGGAGTACCCGTCTCAGTCTGGGCCTCAAGGATGGCATACCA--- 3135737 Query 147642 CAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAA 147701 ||| | ||| || || ||| || |||||||| |||||||| | |||||| | Sbjct 3135736 CAGCTTCTGGGCCTTGACTGTCTGACGGCCACGGCCCTCCTTTTCGTATCTCTCGTAGAG 3135677 Query 147702 CCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAG 147761 | || || ||||||||||| ||||||||| || ||| | ||| || || | || Sbjct 3135676 CTCCTTGAAGTCGTCGCCGTACACATCGGCAAGACCTGGAGCTTCATGAGGGCAGAAAAG 3135617 Query 147762 CGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTA 147821 | ||| | || | | || || ||| |||| || || ||||| ||| || Sbjct 3135616 AGTCCATTCCTGGTTCTTCTCGACACGCTCCATGAACAAGTCGGGAGTCCACATCGCATA 3135557 Query 147822 CATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATT-AAGCACGC 147880 | | || || || | ||||| ||| ||| | | | || ||| || | Sbjct 3135556 GAACAAGTCACGAGCCCGGATTTCCTCCTTGCCGTGGTTCTTTCTTAGGTTCAAGAACTC 3135497 Query 147881 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---C 147937 | ||| |||||||||||||| || | ||||| ||| | || || ||||| | Sbjct 3135496 AA-AGACATCGGCGTGCCAGGGCTCCAAGTAGATGGCGAAAGCGCCCGGTCGCTTATTGC 3135438 Query 147938 CGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGC 147997 ||||||||||||| | ||| || |||| || ||||| || | |||||| ||||| Sbjct 3135437 CGCCCTGGTCGACGTAGCGGGCCGTGTTATTGAACACACGGAGCATGGGAATGAGGCCAT 3135378 Query 147998 TCGCAGTGCCGTTGGT----GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACG 148053 | | || || ||||| | ||| | | | | || | ||| | | ||| Sbjct 3135377 TTGAGGTTCCATTGGTTCCTGCAATATAGGATCCCGTTGCACGAATGCAGT--GAGCA-- 3135322 Query 148054 TTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCGCCC----AATGTCG 148108 || | |||||| || || || || ||| || || || ||| || | | ||||| Sbjct 3135321 TTGAGGCCAATACCACCAGCTGT-CTTGGAGAT--CATGGCACACGTCTTGAGAGTGTCG 3135265 Query 148109 TGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCG 148168 | |||| || ||||||||||| | || | | | | ||| || || || | | || | Sbjct 3135264 T--AGATACCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAGCAGGAGGATAGCTGGG 3135207 Query 148169 GAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCA 148228 | |||||||||| ||| || || || || || || || | || || || Sbjct 3135206 GCTGTGGCGTTCCCGCATTGAAGAGTGTCGGGGATGCATGAGTGAAGCACTTCTGGGACA 3135147 Query 148229 TCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGC 148288 | | || ||||| || || | || || ||||||||||| ||||| | || || | Sbjct 3135146 TGAGATTGTATGTCTCGATGGCCTTCTCAATATCGTCGCCGTGGATGCCGACAGCCACAC 3135087 Query 148289 GCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCAT 148348 |||||| ||| ||||||||||||||||| ||||| ||| ||||||||| || ||| | Sbjct 3135086 GCATGATCATATGCTGTGGTCGTTCGGCGACTTGCTTGCCGATCTTGAGCAGGTATGATT 3135027 Query 148349 TTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 | || | || || | |||||||| | ||| | || || | ||||| ||||||||| Sbjct 3135026 TCTCCAACGTCTTAAAGCCAAAGTATTGGTAGTTGAAGTCCCGGTCGTAGACGATGGCCG 3134967 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/223 (70%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || |||||||| || ||||| ||||| | | ||| | ||| ||| | ||| Sbjct 3136485 TTGACGACCTGAAACTCACCAGCCAGGACACGGCGGGAATAGATGTTGGAAGTATATGGC 3136426 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 ||||| | || || ||||| | || || | || | |||||||||||| || || Sbjct 3136425 TCAAAGCATTCGTTGTTGCCAAGAATCTGCGAGGTTGACGCGGTAGGCATGGGAGCAACA 3136366 Query 147013 AACAATGAATTTCGCAGACCGTAC---GCACGGATGTTGTCCTTCAAAGTTTGCCAGTCC 147069 | || || || || | ||||| ||| |||| | |||||| | | ||||||| Sbjct 3136365 AGCAGAGAGTTGCGAACCCCGTATTTGGCA---ATGTCGGCCTTCAGTGAGTCCCAGTCC 3136309 Query 147070 CACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAG 147110 |||| ||| || || || || |||||||||||||| ||||| Sbjct 3136308 CACAGGTCG--GAAGGAGTAACATTCCACATGTCGTATTGGAG 3136268 >seq12 Length=2267901 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||| |||| | |||||||||| || |||||||||||||||| ||| || ||| ||| Sbjct 994054 ACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 993995 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||||||||| | |||| || ||||| ||||| ||||| |||||||| || || Sbjct 993994 AGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 993935 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | || ||| | | ||| || || | || | || || Sbjct 993934 ATCTTGCTCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTG 993875 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || |||| |||||||||||| Sbjct 993874 CCAGTCAGGGTCTTTACGAAAATCTGCAT 993846 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || |||||||||||| | ||| || ||| ||||| || || |||| | Sbjct 994267 GATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCA 994208 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| || ||||||||||| |||||||| ||||| ||| || || | Sbjct 994207 AAGATGAGACGTTGCTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTGCTCTTGACG 994148 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | ||| || |||| || | || || |||||||| || || Sbjct 994147 TTGTCGATGGTGTCACTGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTC 994088 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 994087 ACGAAGATTTGCAT 994074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611062974280