Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq12 107 2e-18 seq9 87.8 2e-12 >seq12 Length=2267901 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || || | || | ||| | || ||||| || ||||||||||| | Sbjct 994528 CCACCACGCAATCTGAGAACGAGATGCAGAGTGGATTCCTTCTGGATGTTGTAATCTGAG 994469 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || ||||||||||| || || ||||| || || ||||||| || Sbjct 994468 AGTGTACGGCCGTCTTCAAGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGGG 994409 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||| ||| ||||| ||| | |||| | | ||||| ||||| || Sbjct 994408 ATGCCCTCCTTATCCTGAATCTTCGTCTTGA-CGTTGTCAATTGTGTCTGAAGATTCAAC 994350 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||||| || || ||||| ||||| ||||| || ||||| Sbjct 994349 CTCGAGTGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 994302 >seq9 Length=4529175 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || || ||||| ||| || || || | || || || ||||| ||||| || | Sbjct 3501055 CCTTCTGGATATTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGTTGCTTGCCCGCGAAGA 3500996 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||||||||||||||||| || | || ||||||||| |||||| || | | | Sbjct 3500995 TCAACCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGATTTGACATTGT 3500936 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | ||||||| ||||| ||||| | ||||| || || ||||| Sbjct 3500935 CGATCGTGTCGGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGT 3500890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793470396840