Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq12 111 1e-19 seq21 86.0 5e-12 >seq12 Length=2267901 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| |||| || || ||||| || || ||||||||||||| | |||| | || ||| Sbjct 994054 ACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 993995 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||||||||| ||| | ||||| ||||| ||||| || || | || || || || | Sbjct 993994 AGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTCCTGG 993935 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | || | | || | ||||| ||| || || || ||||| || | ||| Sbjct 993934 ATCTTGCTCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTG 993875 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || || || || || ||||| Sbjct 993874 CCAGTCAGGGTCTTTACGAAAATCTGCAT 993846 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||||||| | | |||| | || ||||| || || ||| Sbjct 994270 GTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCCTCGAGTTGCTTTCCG 994211 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | |||||||| || ||||| || || | || || ||||| |||||| | || Sbjct 994210 GCAAAGATGAGACGTTGCTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTGCTCTTG 994151 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| ||||| || ||||| || | ||||| ||||| || Sbjct 994150 ACGTTGTCGATGGTGTCACTGGACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTC 994091 Query 27231 TTCACAAAGATTTGCATA 27248 ||||| |||||||||||| Sbjct 994090 TTCACGAAGATTTGCATA 994073 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 ||||||| ||||| ||||| ||| | || | || ||||| ||||| || | ||||| | Sbjct 994458 CGTCTTCAAGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGGGATGCCCTCCT 994399 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 |||| ||||| | || | | | || | ||||||| | |||||| || || || | Sbjct 994398 TATCCTGAATCTTCGTCTTGACGTTGTCAATTGTGTCTGAAGATTCAACCTCGAGTGTGA 994339 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | | ||||| |||| ||||| ||||||||||||||| Sbjct 994338 TCGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCATA 994301 >seq21 Length=3175452 Score = 86.0 bits (94), Expect = 5e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 109048 AGATTGATGTTGACAATACTGTCGGCAACGGCAAAGAAGGCCAGAATGTGTTTCAAAAAA 109107 ||||| |||||| |||| ||| | | | || |||||||| |||| ||| | || Sbjct 2034506 AGATTCTCGTTGACGATACCGTCTGAAGCAGCGAAGAAGGCAAGAACGTGGGAGACGAAG 2034447 Query 109108 TGCCGCTCGTTGTAAGTCAAACGGTTGCGCCAATCCCGCAGATCTTGGGACAAATCCACC 109167 | ||||| | || ||| |||||| ||||||| ||||||| | |||| ||| || Sbjct 2034446 TAGCGCTCATCGTTGTTCAGTCGGTTGTGCCAATCGTGCAGATCCTTTGACAGATCGACT 2034387 Query 109168 TCTTCCACTTTCCAAAAGCTATCGACGGCATTTTTGTA-ATGATTCCAC 109215 ||||| || ||||||||||| | ||||| |||||| ||| |||||| Sbjct 2034386 TCTTCTGCTGTCCAAAAGCTAGCCTCGGCACGTTTGTACATG-TTCCAC 2034339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934280885576