Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq9 250 8e-61 seq12 156 1e-32 seq13 141 3e-28 seq11 98.7 3e-15 >seq9 Length=4529175 Score = 250 bits (276), Expect = 8e-61 Identities = 494/727 (68%), Gaps = 7/727 (1%) Strand=Plus/Minus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 ||||| ||||||||||||||||| || || || || | | | | | |||| || | Sbjct 150054 ATAGGTATCGATTTAGGTACTACCTACTCATGCGTAGGCATCTTCCGAGATGACCGCATT 149995 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || ||||| || |||||||| ||| |||| || || || | || || |||||||| Sbjct 149994 GAGATCATTGCCAACGATCAAGGCAACCGAACCACCCCCTCCTTTGTCGCCTTTACCGAC 149935 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 ||||||||| | ||||||||| | || || || |||| || || || | || || Sbjct 149934 ACTGAGCGTCTCATTGGTGATGCCGCCAAGAACCAAGTCGCGATGAACCCTCAGAACACA 149875 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTG 349439 || || ||||| ||||| || || || | | || |||| | | | || | | | Sbjct 149874 GTCTTCGATGCGAAGCGTCTGATCGGCCGGAAGTTCGCTGATCCCGAGGTTCA--AGCCG 149817 Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499 | | || || || || || | || | | | ||| || | || ||| | ||| ||| Sbjct 149816 ACATGAAGCACTTCCCCTTCAAGGTCAT-CGACAAG--GGCGGCAAGCCAGTCATTCAGG 149760 Query 349500 TTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAG 349559 | |||| ||||| ||| | ||||| || ||||||||| ||||| |||||||| | Sbjct 149759 TCGAATTCAAAGGCGAAGAGAAACAGTTCACACCCGAAGAGATTTCGTCAATGGTCCTCA 149700 Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619 || |||| || | ||| || |||| | |||| || || | | || || | | Sbjct 149699 CCAAGATGAGAGAGACTGCCGAGTCATACCTGGGTGGCACCGTCAACAACGCCGTCGTCA 149640 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 |||| || || ||||| || || | ||||| || || ||||| || || || | Sbjct 149639 CTGTCCCCGCATATTTCAACGACTCGCAGCGCCAAGCCACCAAAGACGCAGGGTTGATCG 149580 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | || | ||||| || | || || ||||||||||||||||| || || || || || | Sbjct 149579 CCGGTCTCAATGTCCTCCGTATCATCAATGAACCCACTGCTGCCGCCATCGCCTACGGTC 149520 Query 349740 TTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 | || || | || ||| ||| ||| | || || || || | ||||||||||| | Sbjct 149519 TCGACAAGAAGACTGAGGGTGAACGCAATGTCCTCATCTTCGACCTTGGTGGTGGTACCT 149460 Query 349800 TTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 ||||||| || || || || |||||||||| || || || || ||| | |||||||| | Sbjct 149459 TTGATGTTTCCCTCCTTACCATTGAAGAGGGTATCTTCGAGGTCAAATCCACTGCTGGAG 149400 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAAT 349919 | || ||||| ||||| || || ||||| || || || || || |||||| || | Sbjct 149399 ACACTCATCTGGGTGGTGAGGACTTTGACAACCGACTTGTCAATCACTTTGTTTCGGAGT 149340 Query 349920 TTAAGCG 349926 | ||||| Sbjct 149339 TCAAGCG 149333 >seq12 Length=2267901 Score = 156 bits (172), Expect = 1e-32 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| ||||| ||||| ||||| ||||| || || || || || || ||||| Sbjct 994532 CATACCACCACGCAATCTGAGAACGAGATGCAGAGTGGATTCCTTCTGGATGTTGTAATC 994473 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||| || || |||||||| || || ||||| ||||| | ||||| || || || Sbjct 994472 TGAGAGTGTACGGCCGTCTTCAAGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGG 994413 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||||||||| || | || || || ||||| | || || | ||| Sbjct 994412 TGGGATGCCCTCCTTATCCTGAATCTTCGTCTTGACGTTGTCAATTGTGTCTGAAGATTC 994353 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || ||||| | ||||| || || | ||||| ||||| || ||||| Sbjct 994352 AACCTCGAGTGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 994302 Score = 143 bits (158), Expect = 8e-29 Identities = 175/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| ||||| || ||||| || || || | Sbjct 994308 TTTGCATACCACCACGGAGACGGAGGACGAGATGGAGAGTGGATTCTTTCTGGATGTTGT 994249 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || ||||| ||||| |||||||| ||||||||||||| Sbjct 994248 AGTCGGAAAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGAT 994189 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 | |||||||| ||||| ||||| ||||| || ||| || || || || || | ||| Sbjct 994188 CTGGAGGAATGCCTTCCTTATCTTGAATCTT-GCTCTTGACGTTGTCGATGGTGTCACTG 994130 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || || || | ||||| || || || || || || || || ||||| Sbjct 994129 GACTCAACCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 994074 Score = 129 bits (142), Expect = 2e-24 Identities = 174/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || || || || || |||||||| || || || | Sbjct 994080 TTTGCATACCGCCACGAAGACGGAGGACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGT 994021 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || ||||| || || ||||| ||||| ||||| || || ||||||| Sbjct 994020 AGTCGCTCAGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGAT 993961 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGAT 140681 |||||||||| ||||| || ||||| || || ||| || ||||| || || | || | | Sbjct 993960 CAGGAGGAATGCCTTCCTTGTCCTGGATCTT-GCTCTTGACATTGTCGATGGTGTC-GCT 993903 Query 140682 GGT-TCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || ||||| || | ||||| || || || || ||||| ||||||||||| Sbjct 993902 GGACTCGACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAAATCTGCAT 993846 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| |||||| || | ||| || || | || | || ||| || || || || | Sbjct 994764 TTTACTGACCACCTCGCAGTCTCAGCACCAAGTGCAAGGTGCTCTCCTTCTGGATGTTGT 994705 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || |||| || || ||||| |||||||| || || |||||||| || | ||||| | Sbjct 994704 AGTCGGATAGGGTCCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGT 994645 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || || ||||| || || | ||| || || || || | || || Sbjct 994644 CGGGTGGGATACCCTCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATGGTGTCTGAGC 994585 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| || |||| ||||| || || || || || |||||||||||||| Sbjct 994584 TCTCAACTTCCAGCGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 994530 >seq13 Length=1976773 Score = 141 bits (156), Expect = 3e-28 Identities = 246/357 (69%), Gaps = 3/357 (1%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 || |||||| | || |||||||| | | |||||||||||| | || || ||||| | Sbjct 1543916 CCTGAAGAAGTCTCCGCAATGGTTCTGGGCAAAATGAAGGAAGTCGCAGAGGCATACCTG 1543975 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | || || | ||||| | || || || || || || || || |||||| | Sbjct 1543976 GGCAAGAAGGTCACACACGCTGTCGTCACAGTGCCGGCATACTTCAACGACGCCCAGAGA 1544035 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || ||||| ||||||| ||| || || | | ||| ||| | | | || ||| Sbjct 1544036 CAGGCTACTAAAGACGCTGGCACCATCGCTGGTCTGACTGTGCTACGTGTTGTCAACGAA 1544095 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 |||||||| ||||| |||| ||||| || || || || | | | || | | || Sbjct 1544096 CCCACTGCGGCAGCTCTTGCCTATGGCCTGGACAA---GAAGGGCAAGGAGAGCCAGATC 1544152 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 | | | ||| | ||||| ||||| |||||||| || || || || | ||||| || Sbjct 1544153 ATCGTCTACGATCTGGGTGGCGGTACCTTTGATGTGTCGCTTCTCTCAATCGAAGATGGT 1544212 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 | || ||||| | || || ||||||||||| ||||||||||| || ||||| ||| Sbjct 1544213 GTCTTCGAAGTCATGGCTACCGCTGGTGATACCCATCTTGGTGGTGAGGATTTCGAT 1544269 >seq11 Length=3585204 Score = 98.7 bits (108), Expect = 3e-15 Identities = 186/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 378175 ACAGTCATATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATA 378234 || ||| ||||||| | || | | ||||| | || || | ||||| || ||| Sbjct 243489 ACCGTCGAATCATATTTGACAGTGACTTCTTCGAGAGCCTTGACGAGTCGACGTTGAATG 243430 Query 378235 TAACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCA 378294 || || || | ||| || || || || ||||| | ||| |||||||| |||| || Sbjct 243429 TACCCGGTCTCGGCAGTCTTGACAGCTGTGTCAATGAGACCTTCACGACCAGCCATGGCG 243370 Query 378295 TGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTT 378354 |||||||| || || || || || || |||| || | || |||||| || ||||| Sbjct 243369 TGGAAGAAGAACTCCGTGGGGGTCAGACCACGAAGGTAGGAGTTCTCAACGAAACCTCTC 243310 Query 378355 GCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATAT 378414 | | | |||| ||||| || ||| | ||||| | | |||| || ||||| | Sbjct 243309 GAGGGGGCAGAATAATCATCCTTCGTAAAGTGAGGAAGACTGCGATACTTGAACCCGAAG 243250 Query 378415 GGAATTCGTTTTCCATCAACATTCTGTTGACCAA 378448 ||||| ||||| || || ||| ||||||||||| Sbjct 243249 GGAATACGTTTGCCTTCCACAGCCTGTTGACCAA 243216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253953473469