Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq10 107 2e-18 >seq10 Length=3900288 Score = 107 bits (118), Expect = 2e-18 Identities = 240/355 (68%), Gaps = 8/355 (2%) Strand=Plus/Plus Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGG 6786 ||||||||| ||| || |||| ||||| || ||||||||| | | ||| | Sbjct 1102812 GACGTAGAACTGGGCGAACATGTGACACGGCGGCAGCGCCATCTTGGACAAGTCCGCCAC 1102871 Query 6787 GTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCAC 6846 ||||||||||| | | |||||| || || | |||||| |||||| || || ||| Sbjct 1102872 GTTCCACGCGCTGAGGATGATCCTCCTATCGTAGGGGTTCGTCTTCAACTTG-CG--CAC 1102928 Query 6847 G---TACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCG-CTCCCCCGATACT 6902 | | || | ||| ||| | || || |||| |||||| | |||| | || || | Sbjct 1102929 GATTTCCTTGATCTGATCCACGCCTTGGCCCGTATAGTCTG-TTCGACAGTCCGTGTATT 1102987 Query 6903 CCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAG 6962 || || || || | ||||||||| || || || ||||| | |||||| ||||| || Sbjct 1102988 GTGCGCCGAAATGGCGCCACTGGAAGCCATACACGGGGCCTAGGTCGCCTTCCTCGCGTC 1103047 Query 6963 ATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCC 7022 | ||| ||| |||||| || || || || ||||||| |||||||||| | | | Sbjct 1103048 CAGTGAAGCCCAACTTGTCGAGGAATTCCCGCGACCCGTTGCCGTCCCAGATGTGGATGC 1103107 Query 7023 CCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTC 7077 || | ||||| |||| | ||||| || ||||||||| || ||||| Sbjct 1103108 CCGCGTCAGAGAGTGGTTTGGAGGTCGTGCAGCCTGACACGAACCAGAGGAGCTC 1103162 Score = 107 bits (118), Expect = 2e-18 Identities = 240/355 (68%), Gaps = 8/355 (2%) Strand=Plus/Minus Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 ||||| || ||||||||| || ||||| | |||| ||||| | ||| | Sbjct 1103162 GAGCTCCTCTGGTTCGTGTCAGGCTGCACGACCTCCAAACCACTCTCTGACGCGGGCATC 1103103 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | |||||||||| ||||||| || || || || |||||| ||| ||| | || Sbjct 1103102 CACATCTGGGACGGCAACGGGTCGCGGGAATTCCTCGACAAGTTGGGCTTCACTGGACGC 1103043 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 ||||| |||||| | ||||| || || || ||||||||| | || || || || | || Sbjct 1103042 GAGGAAGGCGACCTAGGCCCCGTGTATGGCTTCCAGTGGCGCCATTTCGGCGCACAATAC 1102983 Query 34448 CGGGGGAG-CGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTA---CGTGAT 34503 || | |||| | |||||| |||| || || | ||| ||| | || | |||| Sbjct 1102982 ACGGACTGTCGAA-CAGACTATACGGGCCAAGGCGTGGATCAGATCAAGGAAATCGTG-- 1102926 Query 34504 CGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 || || |||||| |||||| | || || |||||| | | ||||||||||| | Sbjct 1102925 CG-CAAGTTGAAGACGAACCCCTACGATAGGAGGATCATCCTCAGCGCGTGGAACGTGGC 1102867 Query 34564 GGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC 34618 ||| | | ||||||||| || ||||| |||| || ||| ||||||||| Sbjct 1102866 GGACTTGTCCAAGATGGCGCTGCCGCCGTGTCACATGTTCGCCCAGTTCTACGTC 1102812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262271124560