Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016-
08-09] 23 sequences; 29,805,862 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq12 170 4e-37
seq9 134 3e-26
seq10 113 1e-19
>seq12
Length=2267901
Score = 170 bits (188), Expect = 4e-37
Identities = 171/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| ||||| || || |||||||| |||||||| || || |||||
Sbjct 994067 ACGAAGACGGAGGACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAGGGT 994008
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || ||||| || || |||||||| ||||| || || |||||||||| ||
Sbjct 994007 GCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCC 993948
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||||||||||||| || || || ||||||||||| | || ||||| ||
Sbjct 993947 TTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCAAG 993888
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||| ||||| || || || |||||||| || | ||||||
Sbjct 993887 AGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAAATCTGCAT 993846
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || || |||||||| ||||| |||||||| || || | |||||| | |||||
Sbjct 994285 AGGACGAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCGACCATCC 994226
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || || ||||| || ||||| || || ||||||| |||||||| ||
Sbjct 994225 TCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCTGGAGGAATGCCTTCCTTATCT 994166
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| |||||||||||| | ||||||||||||||||| |||
Sbjct 994165 TGAATCTTGCTCTTGACGTTGTCGATGGTGTCACTGGACTCAACCTCGAGAGTGATGGTC 994106
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | |||||
Sbjct 994105 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 994074
Score = 156 bits (172), Expect = 1e-32
Identities = 167/221 (76%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| ||||| || || | ||| | ||| ||| || |||||||| || || | ||||||
Sbjct 994750 CGCAGTCTCAGCACCAAGTGCAAGGTGCTCTCCTTCTGGATGTTGTAGTCGGATAGGGTC 994691
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||| || || |||||||| || ||||| || | || ||||| || || | ||
Sbjct 994690 CGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCGGGTGGGATACCC 994631
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| ||| ||||| ||||||||||| ||||| ||||| || ||
Sbjct 994630 TCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATGGTGTCTGAGCTCTCAACTTCCAGC 994571
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || ||||| || || || ||||| ||||| | ||||||
Sbjct 994570 GTAATAGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 994530
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| | ||| || || || || |||||||| || || |||||||| ||||| | || ||
Sbjct 994523 ACGCAATCTGAGAACGAGATGCAGAGTGGATTCCTTCTGGATGTTGTAATCTGAGAGTGT 994464
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || ||||| |||||||| || |||||||| | ||||||||||| || || | ||
Sbjct 994463 ACGGCCGTCTTCAAGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGGGATGCC 994404
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||| ||||| ||||| || ||||| || || ||||| || ||||||||||||
Sbjct 994403 CTCCTTATCCTGAATCTTCGTCTTGACGTTGTCAATTGTGTCTGAAGATTCAACCTCGAG 994344
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||||||||| || || | || || ||||| | |||||
Sbjct 994343 TGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 994302
>seq9
Length=4529175
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| ||||| || || || || |||| ||||| || || |||||||| ||||||||
Sbjct 3501053 TTCTGGATATTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGTTGCTTGCCCGCGAAGATC 3500994
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| || || ||||| || || | |||||||||||||||||||| ||| || || |||
Sbjct 3500993 AACCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGATTTGACATTGTCG 3500934
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| ||| |||||||| ||||| ||||| |||||||| ||||| || ||
Sbjct 3500933 ATCGTGTCGGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 3500875
Score = 104 bits (114), Expect = 5e-17
Identities = 98/124 (79%), Gaps = 1/124 (1%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| |||||||| || || || || |||||||| || || | ||| || | || |||
Sbjct 1601682 AGGACCAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAAAGCGTGCGGCCGTCT 1601741
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| |||||||| ||||| || ||||| ||||| | |||||||||| |
Sbjct 1601742 TCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATCCCTTCCTTGT-C 1601800
Query 211023 TGGA 211026
||||
Sbjct 1601801 TGGA 1601804
>seq10
Length=3900288
Score = 113 bits (124), Expect = 1e-19
Identities = 193/280 (69%), Gaps = 0/280 (0%)
Strand=Plus/Minus
Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCA 178145
|||| |||||||| ||||||||||| ||| |||||| ||||| ||| ||||
Sbjct 3135833 TTCCCAAGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCATCCTTGTAGAGCATGTAGGGAG 3135774
Query 178146 TTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCT 178205
| ||| ||||| || ||| | || ||| || ||| |||| |||||| ||| ||||
Sbjct 3135773 TACCCGTCTCAGTCTGGGCCTCAAGGATGGCATACCACAGCTTCTGGGCCTTGACTGTCT 3135714
Query 178206 TTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGA 178265
| | || || || ||||| | | ||||||||||| ||| || || || |
Sbjct 3135713 GACGGCCACGGCCCTCCTTTTCGTATCTCTCGTAGAGCTCCTTGAAGTCGTCGCCGTACA 3135654
Query 178266 CATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCA 178325
|||| | ||||| ||||| |||| |||||||| ||| |||| | || | || |
Sbjct 3135653 CATCGGCAAGACCTGGAGCTTCATGAGGGCAGAAAAGAGTCCATTCCTGGTTCTTCTCGA 3135594
Query 178326 CTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
| || | |||||| | ||| | ||||| || ||||||||
Sbjct 3135593 CACGCTCCATGAACAAGTCGGGAGTCCACATCGCATAGAA 3135554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151658412395
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |