Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq12 104 2e-17 >seq12 Length=2267901 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| || || || || ||||||||||| ||||| |||| Sbjct 994074 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCAGT 994133 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| || || ||||| | || |||||||| Sbjct 994134 GACACCATCGACAACGTCAAGAGCAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAG 994193 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || |||||||| || ||||| || || | ||||| | ||| |||||| Sbjct 994194 CAACGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGTCGCACCCTTTCCGACTACAAC 994253 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| ||||| Sbjct 994254 ATCCAGAAAGAATCCAC 994270 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || |||||||| || || || |||| Sbjct 993846 ATGCAGATTTTCGTAAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGTCCAGC 993905 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| ||||| | || || ||||| Sbjct 993906 GACACCATCGACAATGTCAAGA-GCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCA 993964 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || || ||||| || || || | ||||| | |||| ||||| Sbjct 993965 GCAGCGCCTCATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 994024 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| || |||||||| || |||| Sbjct 994025 CATCCAGAAAGAGTCAACCCTACA 994048 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||| | || || || |||||||| ||||| ||||| || | Sbjct 994302 ATGCAAATCTTTGTCAAAACCTTGACTGGCAAGACGATCACACTCGAGGTTGAATCTTCA 994361 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || | || || || | || || || || || | || || || || Sbjct 994362 GACACAATTGACAACGTCAAGACGAAGA-TTCAGGATAAGGAGGGCATCCCACCGGACCA 994420 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || || || || || || || || || ||||||| || || | |||||||| Sbjct 994421 ACAACGATTGATCTTCGCTGGTAAGCAGCTTGAAGACGGCCGTACACTCTCAGATTACAA 994480 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || || ||||| | ||| | ||| | || ||||| || || Sbjct 994481 CATCCAGAAGGAATCCACTCTGCATCTCGTTCTCAGATTGCGTGGTGG 994528 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || || || || || || |||||||| | | Sbjct 994530 ATGCAGATTTTTGTCAAGACCCTGACTGGCAAGACTATTACGCTGGAAGTTGAGAGCTCA 994589 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| || || ||||| || ||| | || || || || Sbjct 994590 GACACCATCGACAACGTCAAATCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAG 994649 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| ||||| || || | || || || ||| |||||| Sbjct 994650 CAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGCCGGACCCTATCCGACTACAAC 994709 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAG 23842 || || || ||| ||| || || || || | || ||||||| || |||| Sbjct 994710 ATCCAGAAGGAGAGCACCTTGCACTTGGTGCTGAGACTGCGAGGTGG-TCAG 994760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009505251684