Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10 156 6e-33 >seq10 Length=3900288 Score = 156 bits (172), Expect = 6e-33 Identities = 387/575 (67%), Gaps = 18/575 (3%) Strand=Plus/Minus Query 78078 TTCTTT-TTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGC 78136 |||||| ||| | || |||| ||| | | ||| | ||||| || || | || || || Sbjct 3135519 TTCTTTCTTAGGTTCAAGAA-CTCAAAGACATCGGCGTGCCAGGGCTCCAAGTAGATGGC 3135461 Query 78137 CATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAAC 78196 | | | || ||||| ||||| || ||||| || | || | ||| |||||||| | || Sbjct 3135460 GAAAGCGCCCGGTCGCTTATTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTATTGAACAC 3135401 Query 78197 TCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACT 78256 | | ||| ||||| | || || || |||||||| ||||| | |||||| ||| | Sbjct 3135400 ACGGAGCATGGGAATGAGGCCATTTGAGGTTCCATTGGTTCCTGCAATATAGGATCCCGT 3135341 Query 78257 TGCGCGAATATTACTAATGGAT--ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 ||| ||||| | | | | || | || || || || || |||| || || | || Sbjct 3135340 TGCACGAATGC-AGTGA-GCATTGAGGCCAATACCACCAGCTGTCTTGGAGATCATGGCA 3135283 Query 78315 CAACGT-TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 || ||| || | || |||||||||||||| || ||||| ||| |||||| | | || Sbjct 3135282 CA-CGTCTTGAGAGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAA 3135224 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 ||| || | || | || ||||| ||||| || | |||||| |||||||| || Sbjct 3135223 GCAGGAGGATAGCTGGGGCTGTGGCGTTCCCGCATTGAAGAGTGTCGGGGATGCATGAGT 3135164 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC----CCATT 78489 || || || | || | ||||||||||| || || || || || || || | Sbjct 3135163 GAAGCACTTCTGGGACATGAGATTGTATGTCTCGATGGCCTTCTCAATATCGTCGCCGTG 3135104 Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTT-ATTA 78548 |||| || || || |||||||| | ||||||||| |||| ||| || ||| || Sbjct 3135103 GATG----CCGACAGCCACACGCATGATCATATGCTGTGGTCGTTC-GGCGACTTGCTTG 3135049 Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608 || || | || ||||||||| ||||| || ||||| ||||| || | ||| ||| Sbjct 3135048 CCGATCTTGAGCAGGTATGATTTCTCCAACGTCTTAAAGCCAAAGTATTGGTAGTTGAAG 3134989 Query 78609 TCTCTCTCGTAAATAATAACAGAATTTAGTTTATC 78643 || | ||||| | || | || || |||| ||| Sbjct 3134988 TCCCGGTCGTAGACGATGGCCGAGTTGAGTTCATC 3134954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668600282720