Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq10 185 1e-41 >seq10 Length=3900288 Score = 185 bits (204), Expect = 1e-41 Identities = 390/572 (68%), Gaps = 20/572 (3%) Strand=Plus/Minus Query 76673 TTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 76732 |||||| | || | | |||||| | | ||| | ||||| || || | || || || Sbjct 3135519 TTCTTTCTTAGGTTCAAGAACTCAAAGACATCGGCGTGCCAGGGCTCCAAGTAGATGGCG 3135460 Query 76733 ATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACT 76792 | | | |||||||| ||||| || ||||| || | || | ||| |||||||| | || Sbjct 3135459 AAAGCGCCCGGTCGCTTATTGCCGCCCTGGTCGACGTAGCGGGCCGTGTTATTGAACACA 3135400 Query 76793 CTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACAT 76852 | | ||| ||||| | ||| || || || ||||| ||||| | |||||| ||| | Sbjct 3135399 CGGAGCATGGGAATGAGGCCATTTGAGGTTCCATTGGTTCCTGCAATATAGGATCCCGTT 3135340 Query 76853 GCACGAAT--ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 76910 |||||||| | | || || |||| || || || || | || ||||| | |||| Sbjct 3135339 GCACGAATGCAGTGAGCATTGA--GGCCAATACCACCAGCTGTCTTGGAGATCATGGCAC 3135282 Query 76911 AGCGT-TTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAA 76969 | ||| || | ||||| ||||| ||||| || || || ||| |||||| | | || Sbjct 3135281 A-CGTCTTGAGAGTGTCGTAGATACCCTCGATGCTGTCCTCCTTCATGTCGATCAAGAAG 3135223 Query 76970 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTG 77029 ||| || | || | || ||||| ||||| || | ||| || |||||||||||| Sbjct 3135222 CAGGAGGATAGCTGGGGCTGTGGCGTTCCCGCATTGAAGAGTGTCGGGGATGCATGAGTG 3135163 Query 77030 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCT--ATATC----CCAT 77083 || || || | || | ||||||||||| || || | ||||| ||||| || | Sbjct 3135162 AAGCACTTCTGGGACATGAGATTGTATGTCTCGATGGC--CTTCTCAATATCGTCGCCGT 3135105 Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTT-ATT 77142 |||| || ||||| |||||||| | ||||||||| |||||||| | | ||| || Sbjct 3135104 GGATG----CCGACAGCCACACGCATGATCATATGCTGTGGTCGTTCGGC-GACTTGCTT 3135050 Query 77143 ATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 77202 || || | || ||||||||| ||||| || ||||| ||||| || | ||| || Sbjct 3135049 GCCGATCTTGAGCAGGTATGATTTCTCCAACGTCTTAAAGCCAAAGTATTGGTAGTTGAA 3134990 Query 77203 GTCTCTTTCGTAAATAATAACCGAATTTAGTT 77234 ||| | ||||| | || |||| || |||| Sbjct 3134989 GTCCCGGTCGTAGACGATGGCCGAGTTGAGTT 3134958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934195031360