Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq12 122 2e-22 seq9 86.0 1e-11 >seq12 Length=2267901 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAA 151972 ||| || ||||||||||| |||| || || | ||||| || || || ||||| || Sbjct 994721 CTCCTTCTGGATGTTGTAGTCGGATAGGGTCCGGCCATCCTCAAGTTGCTTGCCGGCAAA 994662 Query 151973 GATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGT 152032 ||| || ||||||||||| | | ||| || ||||| || || || || |||||| | Sbjct 994661 GATCAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCCTGGATCTTGGATTTGACGTT 994602 Query 152033 CTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCAC 152092 || | | ||||||| ||||| ||||| || |||||||| ||||| || || ||||| || Sbjct 994601 GTCGATGGTGTCTGAGCTCTCAACTTCCAGCGTAATAGTCTTGCCAGTCAGGGTCTTGAC 994542 Query 152093 GAAGACCTGCAT 152104 || | |||||| Sbjct 994541 AAAAATCTGCAT 994530 Score = 116 bits (128), Expect = 9e-21 Identities = 162/223 (73%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| ||||| ||||| || ||||| ||||||||||| |||| | || | Sbjct 994292 GAGACGGAGGACGAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAAAGGGTGCG 994233 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| ||||| ||||| || | ||||| || | | || ||| Sbjct 994232 ACCATCCTCGAGTTGCTTT--CCGGCAAAGATGAGACGTTGCTGATCTGGAGGAATGCCT 994175 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC--TGAACTCTCTACTTCAA 152061 ||||| |||||||| || ||||| | || | | |||| || |||| || || | Sbjct 994174 TCCTTATCTTGAATCTTGCTCTTGACGTTGTCGATGGTGTCACTGGACTCA--ACCTCGA 994117 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || ||||| || || ||||||||||||| ||||| Sbjct 994116 GAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 994074 Score = 107 bits (118), Expect = 4e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || |||||||| ||||||||||| ||| | || | ||||| Sbjct 994058 GAGGACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATC 993999 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| || |||||||| || | |||||| || | | || |||||||| || Sbjct 993998 CTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGAATGCCTTCCTTGTC 993939 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATA 152069 || || || |||||| | || | | ||| ||| | ||| || |||||||| || Sbjct 993938 CTGGATCTTGCTCTTGACATTGTCGATGGTGTCGCTGGA--CTCGACCTCAAGAGTGATG 993881 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||| ||||| | |||||| Sbjct 993880 GTCTTGCCAGTCAGGGTCTTTACGAAAATCTGCAT 993846 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| || ||||| ||||| || || || |||||||||||||| | | || | || Sbjct 994517 TCTGAGAACGAGATGCAGAGTGGATTCCTTCTGGATGTTGTAATCTGAGAGTGTACGGCC 994458 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||| || || || |||||||| | | || ||||||| | ||| || ||||| Sbjct 994457 GTCTTCAAGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGGGATGCCCTCCTT 994398 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 || ||||| || ||||| | || | |||||||| || || || || || || Sbjct 994397 ATCCTGAATCTTCGTCTTGACGTTGTCAATTGTGTCTGAAGATTCAACCTCGAGTGTGAT 994338 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | || || || |||| ||||| Sbjct 994337 CGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 994302 >seq9 Length=4529175 Score = 86.0 bits (94), Expect = 1e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||| ||||| ||| | || | ||||| || || || || |||||||| Sbjct 3501053 TTCTGGATATTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGTTGCTTGCCCGCGAAGATC 3500994 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | || ||||||||||| | ||| |||||||| || || || || ||||||| | || Sbjct 3500993 AACCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGATTTGACATTGTCG 3500934 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||| || || || || || || || || ||||||||||| ||||| |||||| Sbjct 3500933 ATCGTGTCGGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 3500874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820459983433