Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq12 172 1e-37 seq9 138 2e-27 seq15 89.7 1e-12 >seq12 Length=2267901 Score = 172 bits (190), Expect = 1e-37 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | ||| |||||| |||||||||||||| | Sbjct 994301 ACCACCACGGAGACGGAGGACGAGATGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGA 994242 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| |||||||| ||||| || ||||||||||| | |||||| || || || Sbjct 994241 AAGGGTGCGACCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCTGGAGG 994182 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || ||||| ||||| ||||| ||| || ||| | ||||| ||||| | || | Sbjct 994181 AATGCCTTCCTTATCTTGAATCTT-GCTCTTGACGTTGTCGATGGTGTCACTGGACTCAA 994123 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||||||||| ||||| || |||| ||||| ||||| || ||||| Sbjct 994122 CCTCGAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 994074 Score = 172 bits (190), Expect = 1e-37 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| | || |||| || || ||||| || || |||||||||||||| | Sbjct 994757 ACCACCTCGCAGTCTCAGCACCAAGTGCAAGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 994698 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| ||||| || ||||||||||||| | || ||||| || Sbjct 994697 TAGGGTCCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCGGGTGG 994638 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGA 283050 |||||||||||||| |||||||| | ||| ||| | ||||| ||||| | |||| || | Sbjct 994637 GATACCCTCCTTGTCCTGGATCTTGGATTTGACGTTGTCGATGGTGTCTG-AGCTCTCAA 994579 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| || || || ||||| || |||| ||||| || || |||||||| Sbjct 994578 CTTCCAGCGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 994530 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||| | || || ||||| | ||| ||| || ||||||||||| || | Sbjct 994529 ACCACCACGCAATCTGAGAACGAGATGCAGAGTGGATTCCTTCTGGATGTTGTAATCTGA 994470 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||| || || || || || || || |||||||| ||||||||||| || Sbjct 994469 GAGTGTACGGCCGTCTTCAAGCTGCTTACCAGCGAAGATCAATCGTTGTTGGTCCGGTGG 994410 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||| || || ||||| | || ||| | || || ||||| |||| ||| || Sbjct 994409 GATGCCCTCCTTATCCTGAATCTTCGTCTTGACGTTGTCAATTGTGTCTGAAGATTCAAC 994350 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| || ||||| || || || || || ||||| Sbjct 994349 CTCGAGTGTGATCGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 994302 Score = 149 bits (164), Expect = 1e-30 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || ||||| |||| || ||||| |||||||||||||| Sbjct 994073 ACCGCCACGAAGACGGAGGACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCT 994014 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || ||||| || || ||||| | || || || ||| || Sbjct 994013 CAGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGG 993954 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||| || |||||||| |||||| ||||| || || | ||||| ||||| | |||| Sbjct 993953 AATGCCTTCCTTGTCCTGGATC-TTGCTCTTGACATTGTCGATGGTGTCGCTGGACTCGA 993895 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || |||||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 993894 CCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAAATCTGCAT 993846 >seq9 Length=4529175 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || ||||| |||||||| ||||| ||||||||||| ||||| || || || |||||| Sbjct 3501053 TTCTGGATATTGTAGTCGCTCAGCGTCCGGCCATCCTCGAGTTGCTTGCCCGCGAAGATC 3500994 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || ||||| || || || |||||||| |||||||| | ||| || | ||| Sbjct 3500993 AACCGCTGCTGGTCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGATTTGACATTGTCG 3500934 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | |||||| ||||| ||||| ||||| ||||| | ||||| ||||| Sbjct 3500933 ATCGTGTCGGAGGATTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 3500875 Score = 93.3 bits (102), Expect = 9e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || ||||| || | || ||| || |||||||||||||| | Sbjct 1601666 ACCGCCGCGGAGACGCAGGACCAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGA 1601725 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 |||||||||||| || || ||||| || ||||| ||||||| || || ||||| || Sbjct 1601726 AAGCGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGG 1601785 Query 282992 AATACCCTCCTTGTCT 283007 || || ||||||||| Sbjct 1601786 GATCCCTTCCTTGTCT 1601801 >seq15 Length=1330720 Score = 89.7 bits (98), Expect = 1e-12 Identities = 246/369 (67%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 274431 ACGATGGGCGTGATAAATTTCTTCAGGAAACCTGGAATTTCTAGCAGACTGGGGAAACA- 274489 |||||||| || || |||| || ||| |||||| | || | |||||| || Sbjct 944558 ACGATGGGAGTAATGAATTCGACCAAGAATTTTGGAATCTTCAGTAAACTGGGAAATTGT 944499 Query 274490 ACTATGGAAAAAGTTCATGACAAGACCTGATATGTGAGTTCCGTCAACGTCGGCATCTGT 274549 ||| |||| ||||| || | | ||| |||||| |||||||| || ||| || Sbjct 944498 ACT-TGGAGGAAGTTGATCAGCAACCCTTTAATGTGACTTCCGTCATGATCCTGATCGGT 944440 Query 274550 CATGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTC-CCTGTTT 274608 ||||||||| | ||| || || ||||| | ||||| |||| |||| |||| Sbjct 944439 CATGATCATCAAATGACCGTAACGAAGACCGTTTGTATCAGTATAGGTCTTCTTGTGTTG 944380 Query 274609 GAAGCCCAAGAATTTGCTTGA-GAGCGGTGATTTCTTCGTTCTTTGTGATACTCGCCACA 274667 || ||||||||| || ||||| | | | |||||| | ||||| | ||| | || Sbjct 944379 GAGGCCCAAGAAATT-CTTGATGTTCTG-GATTTCGGCATTCTTCGAGATCTGATCGACC 944322 Query 274668 GAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTCGCGC 274727 |||||||| || ||||| || | |||||| || || ||||| || || || || | Sbjct 944321 GAAGCATCTCGGACGTTGAGTAGCTTACCACGTAGTGGGAAGACACCGAACAAATCTGGG 944262 Query 274728 CCGATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAATCTCCCTCTGTGAGAATC 274787 || | || || | || || ||||| || | ||||| || || || || || ||| Sbjct 944261 CCTACAACGGATCGTCCTGCCATCGCCAGGCCTTTGGCTGAGTCACCTTCAGTCAGGATC 944202 Query 274788 AAAGTACAC 274796 | |||||| Sbjct 944201 AGTGTACAC 944193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738891539042