Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq12 159 8e-34 seq9 138 3e-27 >seq12 Length=2267901 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || || || || ||||| |||||||| || | ||| Sbjct 994077 CAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTCGAGGTTGAGTCCAGTGAC 994136 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| || || ||||| || ||||| || |||||| Sbjct 994137 ACCATCGACAACGTCAAGAGCAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAGCAA 994196 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| || ||||| ||||| | || ||| |||| || ||| || Sbjct 994197 CGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGTCGCACCCTTTCCGACTACAACATC 994256 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| || || ||||| || Sbjct 994257 CAGAAAGAATCCACTCTCCATCTCGT 994282 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || || || |||||||| |||||||| ||| |||||| Sbjct 994305 CAAATCTTTGTCAAAACCTTGACTGGCAAGACGATCACACTCGAGGTTGAATCTTCAGAC 994364 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||||||||||| || || || ||||| |||||||| ||| Sbjct 994365 ACAATTGACAACGTCAAGACGAAGATTCAGGATAAGGAGGGCATCCCACCGGACCAACAA 994424 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || || ||||| ||||| || | || || | ||||| ||| || Sbjct 994425 CGATTGATCTTCGCTGGTAAGCAGCTTGAAGACGGCCGTACACTCTCAGATTACAACATC 994484 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || ||||| || |||||||| ||| | ||| Sbjct 994485 CAGAAGGAATCCACTCTGCATCTCGTTCTCAGA 994517 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || || || ||||| || ||||| || | ||| Sbjct 993849 CAGATTTTCGTAAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGAC 993908 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| ||||| || ||||| || ||||| Sbjct 993909 ACCATCGACAATGTCAAGAGCAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAGCAG 993968 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || ||||||||||| ||||| | || || ||| || ||| || Sbjct 993969 CGCCTCATCTTCGCTGGTAAACAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 994028 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| ||||| || || || || Sbjct 994029 CAGAAAGAGTCAACCCTACACCTGGT 994054 Score = 136 bits (150), Expect = 1e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || || || || || || || || || || ||||||||| Sbjct 994533 CAGATTTTTGTCAAGACCCTGACTGGCAAGACTATTACGCTGGAAGTTGAGAGCTCAGAC 994592 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 994593 ACCATCGACAACGTCAAATCCAAGATCCAGGACAAGGAGGGTATCCCACCCGACCAGCAG 994652 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| ||||| || || || || ||||| |||| || |||| || ||| || Sbjct 994653 AGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGCCGGACCCTATCCGACTACAACATC 994712 Query 178104 CAAAAAGA 178111 || || || Sbjct 994713 CAGAAGGA 994720 >seq9 Length=4529175 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || |||||||||||||| ||| ||| ||||| ||| Sbjct 3500875 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAATCCTCCGACACGATC 3500934 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || |||||| ||||| |||||||| ||||| ||||| ||||||||||| || | Sbjct 3500935 GACAATGTCAAATCCAAGATCCAGGACAAGGAAGGCATCCCACCGGACCAGCAGCGGTTG 3500994 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || || ||||| ||||| |||| || ||| || || |||| || Sbjct 3500995 ATCTTCGCGGGCAAGCAACTCGAGGATGGCCGGACGCTGAGCGACTACAATATCCAGAA 3501053 Score = 96.9 bits (106), Expect = 8e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| ||||| |||||||| |||||||| || || ||||||||||| || || |||||| Sbjct 1601800 GACAAGGAAGGGATCCCTCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAACTCGAA 1601741 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || | || ||| |||| || ||| |||| || ||||| || || || || || Sbjct 1601740 GACGGCCGCACGCTTTCCGACTACAACATCCAGAAGGAATCGACCCTTCACCTGGT 1601685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730845275462