Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20carrionii_20[genbank_20GCA_5F001700775.1_202016- 08-09] 23 sequences; 29,805,862 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq12 138 1e-27 seq9 114 1e-20 >seq12 Length=2267901 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| || || || ||| ||||| ||||| |||||| Sbjct 994072 CCGCCACGAAGACGGAGGACCAGGTGTAGGGTTGACTCTTTCTGGATGTTGTAGTCGCTC 994013 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||| || || ||||| || |||||||| || || | ||| Sbjct 994012 AGGGTGCGGCCATCCTCGAGCTGTTTACCAGCGAAGATGAGGCGCTGCTGATCAGGAGGA 993953 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| || ||| || | ||| |||||||| ||||| | Sbjct 993952 ATGCCTTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATG--GTGTCGCTGGACTCGA 993895 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || ||||| |||||||||||||||||||| Sbjct 993894 CCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTTACGAAAATCTGCAT 993846 Score = 118 bits (130), Expect = 1e-21 Identities = 157/214 (73%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| |||| |||||||||||||| ||||| |||||||| ||||| || | || || Sbjct 994739 CACCAAGTGCAAGGTGCTCTCCTTCTGGATGTTGTAGTCGGATAGGGTCCGGCCATCCTC 994680 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 || ||||||||||| || ||||| | ||| ||||| | || | | |||||||||| | Sbjct 994679 AAGTTGCTTGCCGGCAAAGATCAGTCTCTGCTGGTCGGGTGGGATACCCTCCTTGTCC-T 994621 Query 41773 GATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTTATCG 41828 | | || | || ||| | | | ||||| ||| ||| || |||| ||| || | Sbjct 994620 GGATCTTGGATTTGACGTTGTCGATGGTGTCTGAGCT---CTCAACTTCCAGCGTAATAG 994564 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || || ||||| ||||| || ||||||||||| Sbjct 994563 TCTTGCCAGTCAGGGTCTTGACAAAAATCTGCAT 994530 >seq9 Length=4529175 Score = 114 bits (126), Expect = 1e-20 Identities = 108/135 (80%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| ||||| | ||||| || || || |||||||| ||||| |||||||| Sbjct 1601667 CCGCCGCGGAGACGCAGGACCAGGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAA 1601726 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGG 41754 || ||||| |||| ||||| |||||||||||||| ||||||||||| ||||| | ||| Sbjct 1601727 AGCGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 1601786 Query 41755 AACGCTCTCCTTGTC 41769 | | || |||||||| Sbjct 1601787 ATCCCT-TCCTTGTC 1601800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303867087600