Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 143 3e-29 seq2 140 3e-28 seq17 114 1e-20 seq51 107 2e-18 seq112 105 7e-18 >seq1 Length=1383374 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| |||||||| | || ||||| ||| | Sbjct 701360 ATGCAAATCTTCGTGAAGACACTTACTGGCAAGACCATCACGCTTGAGGTCGAGTCCAGC 701419 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| || || | ||||| |||||||||||| |||||||| Sbjct 701420 GACACGATCGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 701479 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| || || || |||| |||||||| |||||||||| Sbjct 701480 CAGCGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACCCTGTCCGACTACAAC 701539 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || ||||| || || Sbjct 701540 ATCCAGAAGGAGTCGACCCTGCACCTGGT 701568 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || || || ||||| || || || | || || || | | Sbjct 701816 ATGCAAATCTTCGTAAAGACACTTACTGGCAAGACGATTACGCTGGAGGTGGAGAGCTCA 701875 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| |||||||| || ||||||| Sbjct 701876 GACACGATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCA 701934 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||||||||| ||| |||| |||| ||| || |||| ||||||||| Sbjct 701935 GCAGCGGCTGATTTTCGCGGGCAAGCAGTTGGAGGACGGGCGGACTCTCAGCGACTACAA 701994 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| |||| | ||| || | || | |||||| Sbjct 701995 CATCCAGAAGGAGAGCACGTTGCACTTGGTGCTGAGACTGCGTGGCGGC 702043 Score = 131 bits (144), Expect = 2e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || || || ||||| || ||||| | || || ||| | | | Sbjct 701588 ATGCAAATCTTCGTAAAGACACTTACTGGCAAGACGATCACGCTGGAGGTTGAATCGAGC 701647 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || || | ||||| || || ||||| | ||||| Sbjct 701648 GACACGATCGACAACG-TCAAGAGCAAGATCCAGGACAAGGAAGGGATCCCGCCCGACCA 701706 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| |||| ||||| ||| |||||||| Sbjct 701707 GCAGCGCCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAA 701766 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | ||||| ||||| ||| Sbjct 701767 CATCCAGAAGGAATCGACGCTCCATCTCGTG 701797 >seq2 Length=1089760 Score = 140 bits (154), Expect = 3e-28 Identities = 342/511 (67%), Gaps = 12/511 (2%) Strand=Plus/Minus Query 116870 ATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTACGTGCGCTCTT 116927 |||||||| | |||||||||||||| | || ||||| ||||| || || Sbjct 280166 ATGGAGAATATCCACTCGGAAATGTA--CAGCCTTCTCATTGACACCTATGTAAAGGACC 280109 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | |||||| | |||| |||||||||| || || || ||| | |||| | Sbjct 280108 CCAAAGAGAAGACATATCTGTTCGACGCCATCGACACAATCCCTTGCATTCGCAAGAAAG 280049 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 | || ||||| ||||| ||||| | | || |||| | ||| | | | || || |||| Sbjct 280048 CAGACTGGGCTCTGCGATGGATATCAGACAAAGAGTCGAGCTTTGCCCAACGACTAGTGG 279989 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 | ||||| |||||||| ||| ||||||| || || || || |||| || ||||| | Sbjct 279988 CTTTCGCAGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCATCTTCTGGCTGA 279929 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 ||| || || ||||||||||| || ||| ||||||||||||||| | ||||||| Sbjct 279928 AGAGCAAAGGACTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGG 279869 Query 117168 GTCTGCATTGCGACTTTGCCTG---TTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCG 117224 | |||| |||||||| || |||| || ||| ||| || ||| ||| | Sbjct 279868 GCATGCACACGGACTTTGCGTGCCTTTTGATG--CAA-CATCTGCAGCACAAGCCGGACC 279812 Query 117225 CGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 | | | || | || | ||||| || ||| ||||| || |||||||||| Sbjct 279811 CACAACTCATCGAAAACATTATAACCGAAGCCGTCAGGATCGAAAAGGAATTCCTCACCG 279752 Query 117285 AAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAG 117343 | || || || || ||||| || | || | |||| | |||| || ||||| ||| Sbjct 279751 ATGCCCTCCCCGTCGCACTGCTCGGCATGAACT-CGAAGCTCATGTGTCAGTACATTGAG 279693 Query 117344 TTCGTCGCCGACAGGCTGCTGCTCGAGCTGG 117374 || || || ||| | ||||| || | |||| Sbjct 279692 TTTGTTGCTGACCGTCTGCTCCTTGCCCTGG 279662 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/191 (70%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 116669 TTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAG---CGCTTG 116725 |||||||| | || || || || || ||||| ||| ||||||| | || ||| Sbjct 280420 TTCTGGACGGCAGAAGAAGTTGATCTCTCCAAAGACCTTCACGACTGGCACAACCGTTTG 280361 Query 116726 AACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGC 116785 ||| | |||| || | |||||| ||||| || ||||| || || || |||||| Sbjct 280360 AACAATGACGAACGTTACTTCATCTCTCACGTCCTCGCCTTCTTTGCTGCATCGGACGGC 280301 Query 116786 ATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGG 116845 || ||||||||||| || | ||||| ||| | || || || ||| | || || || Sbjct 280300 ATTGTCAACGAGAACCTTCTAGAGCGCTTCAGTGCCGAAGTACAAGTGCCGGAAGCCCGT 280241 Query 116846 TGCTTCTACGG 116856 ||||||||||| Sbjct 280240 TGCTTCTACGG 280230 >seq17 Length=408214 Score = 114 bits (126), Expect = 1e-20 Identities = 136/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGT 40757 ||||| || || ||||||||||| ||||||||| | || ||||| | |||||| | Sbjct 189906 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACGATC 189965 Query 40758 GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| || |||||||| | |||||||| ||| | Sbjct 189966 GACAACG-TCAAGTCCAAGATCCAAGACAAGGAAGGCATCCCGCCCGACCAGCAGCGATT 190024 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| || || || || | || || || | |||||||||||||||||| Sbjct 190025 GATCTTCGCCGGCAAGCAACTTGAAGATGGCCGAACTCTGAGCGACTACAACATCCAGAA 190084 Query 40878 GG 40879 || Sbjct 190085 GG 190086 >seq51 Length=241757 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || ||||| ||| ||||||||||||| || |||| ||| ||||| || || || Sbjct 20372 GACAAGGAAGGCATTCCCCCGGACCAGCAACGCCTGATCTTCGCCGGCAAGCAACTCGAA 20431 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||| ||| ||||||||||||||||||||| | || || || || || ||| Sbjct 20432 GACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAATCGACCCTCCACCTGGTCTTG 20491 Query 40903 CG 40904 || Sbjct 20492 CG 20493 >seq112 Length=144762 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||| | || || || || | ||| || ||||| | || || || | | | Sbjct 46099 ATGCAGATTTTCATGAAGACACTTACTGTCAAGACGATCACGCTGGAGGTTGAGTCGAGC 46040 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || ||| ||||| || || ||| | | |||||| Sbjct 46039 GACACAATCAACAACATCAAGAGCAAGATTTAGGACAAGGAAGGGATCACATCCGACCAG 45980 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| |||||||| |||||||| |||| ||||| ||| ||||||||| Sbjct 45979 CAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAAC 45920 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| | ||||| ||||| ||| ||| | | |||||| Sbjct 45919 ATCCAGAAGGAATCGACGCTCCATCTCGTGCCCCGCCTCCGCGGCGGC 45872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216211728640