Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 138 7e-28 seq112 105 4e-18 seq17 91.5 1e-13 >seq1 Length=1383374 Score = 138 bits (152), Expect = 7e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| |||| ||||| || || | || ||| ||||| ||||||||||| || Sbjct 701814 CCGCCGCGGAGCCGGAGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 701755 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| |||| |||||||||||| || || || ||||||||||| | |||| Sbjct 701754 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 701695 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||| | | | | |||| ||| ||||||| || Sbjct 701694 ATCCCT-TCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTGTCGCTCGATTCAAC 701636 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || ||||| || || || || || ||||| ||||| Sbjct 701635 CTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 701588 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || |||||||| | || || ||||| ||||||||||||||| Sbjct 701586 CCGCCACGGAGACGGAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 701527 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||||| ||||| || || ||||||||||| ||| Sbjct 701526 AGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 701467 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| || | || | | |||| ||| | || ||||| Sbjct 701466 ATGCCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCGATCGTGTCGCTGGACTCGACC 701407 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGC 34392 || | ||||||||| ||||| || || || ||||| ||||| ||||| || Sbjct 701406 TCAAGCGTGATGGTCTTGCCAGTAAGTGTCTTCACGAAGATTTGCATGGC 701357 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| |||||||||| ||| || || || || ||||| |||||||||||| Sbjct 702042 CCGCCACGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTG 701983 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| |||||||||||||| |||||||| |||||||||||||| || Sbjct 701982 AGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGA 701923 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | |||| || | || || Sbjct 701922 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACC 701863 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || || ||||| || || || || || ||||| ||||| Sbjct 701862 TCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 701816 >seq112 Length=144762 Score = 105 bits (116), Expect = 4e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | |||| || || | || ||| ||||| ||||||||||| || Sbjct 45873 CCGCCGCGGAGGCGGGGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 45932 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| ||| |||| |||| ||||||||| || || || || ||||||||||| || | | Sbjct 45933 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGATGTG 45992 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGA--TCGGCTATCGAATCGGTCGATTCG 34339 | || |||||||| ||| | ||||| | || | | || | ||| |||| || Sbjct 45993 ATCCCT-TCCTTGTC--CTAAATCTTGCTCTTGATGTTGTTGATTGTGTCGCTCGACTCA 46049 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| |||||| || ||| | || || || |||| || |||||||| Sbjct 46050 ACCTCCAGCGTGATCGTCTTGACAGTAAGTGTCTTCATGAAAATCTGCAT 46099 >seq17 Length=408214 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||| ||| ||| | || || | |||||||| ||||| || Sbjct 190084 TTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGATC 190025 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 | |||||||||||| || | || |||||||| ||||| ||| | | | | Sbjct 190024 AATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCG 189965 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 |||| |||| ||| ||||| || | |||||||| ||||| ||||| || || || ||| Sbjct 189964 ATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 189905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070173027840