Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq91 437 8e-118 seq2 178 1e-39 seq1 123 2e-23 seq17 93.3 4e-14 >seq91 Length=177601 Score = 437 bits (484), Expect = 8e-118 Identities = 1240/1890 (66%), Gaps = 27/1890 (1%) Strand=Plus/Plus Query 22104 TCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATG 22162 ||||| || || || || || || | | || ||||| | ||||| || || |||||| Sbjct 133977 TCTTGGTCGACAGTGAATTGAATAGGTTGTGTGGCCGCCATCGTGCGCAGGTAGTACATG 134036 Query 22163 CCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTC 22222 || ||||| |||||||| ||||| | ||| || || ||| | || || | Sbjct 134037 CCGGTCTTGAGACCCATTTTCCAGCCTGCAAAGTGCATGCTCGTGATCTTGCCCATGGTT 134096 Query 22223 GGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCG 22282 || | || || | |||| ||||| ||| || || || || || || || || Sbjct 134097 GGTTCTTTCAAGTGGATGTTGAGAGACTGGGACTGGTCAATGAAGGCACCACGGTCCGCT 134156 Query 22283 GCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATC 22342 ||||| | | | || ||| ||||||||||||||||||||||| |||| Sbjct 134157 GCCATTTGCAGGACGGTCCGCTGGCTGATTTCCCATACGGTCTTGTACAGAGCTTTGATG 134216 Query 22343 TCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401 || || | || | | || | |||| || ||| | | |||||| ||| || Sbjct 134217 TCCGCAGGGA-CGTTGGGGATGTTTTGGATCGAGCCGCCCTCGGCGATGATCCGATTCTT 134275 Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCAC 22461 || | ||| ||| | || | | || | ||| || | ||| | || || || Sbjct 134276 CATATTGTCGGACCATAGGCCCAAGTCGACGAGATCCTTCAGCAGCCAGGGATTGACAAC 134335 Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 || ||||| |||| | ||| ||||| ||| || || |||||| |||||||||| | Sbjct 134336 CTGGAACTCACCGGCAAGGACACGGCGAGAGTAGATATTAGATGTGTACGGTTCGAAGCA 134395 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 ||| ||||| || || || |||| ||||| || || ||||| || || | || || || Sbjct 134396 TTCGTTGTTGCCGAGGATTTGAGAAGTCGAGGCAGTGGGCATGGGAGCAACAAGGAGAGA 134455 Query 22582 GTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGA--GCATCGACCAGTCCCACAGATCG 22639 ||| | | || || || | ||| | || | || || ||| ||||||| || Sbjct 134456 GTTGCGAATACCATGTTTGGCAATCTCGGCTTTCAAGGCGTC--CCAATCCCACAAGTCT 134513 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGGGCTGC 22697 || || || ||||| |||||| |||||||| | | ||| ||||| | ||||||| Sbjct 134514 GAGGGAGTGACATT---CCACATGTCGTATTGAAGAATGCCTTGCGACACT--GGGCTGC 134568 Query 22698 CTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGC 22757 ||||||| ||||| || | || | | || ||||| || || | || Sbjct 134569 CTTCGTATGTTTCATATGTTCCCTGCTCCTTTGCCAGTTCACAAGAAGCAGTGAGAGCAG 134628 Query 22758 CGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACG 22817 | | || || ||||||||||||| | ||||||| ||| || ||| | | Sbjct 134629 CATGGTAGATGGTCTCGAAGATTTGGATATTCAATTGCCTGGCCTCGGGAGAGTCGAAAG 134688 Query 22818 GCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 | | ||||| | | ||| ||||| || | ||| ||||| || | ||||| ||||||| Sbjct 134689 GAAGACGCAGCGCAAGGAAGGCGTCGGCGAGACCTTGAACTCCGAGACCGACGGGTCGGT 134748 Query 22878 TTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGT 22937 | | || | || || || || | ||| || | || |||||| | ||| Sbjct 134749 GTCGGAAGTTGCTCTTCTTCGCTTCAGGGACAGGGTAGTAGTTGATATCGATAATCTTGT 134808 Query 22938 TCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC-C 22996 | | ||| | ||||||| | || | | ||||| || | || | Sbjct 134809 TTAGGTTGCGAGTCACAACCTGAGTGACCTCATGAAGACGACCGAAGTCATATTCACCTC 134868 Query 22997 GA--TTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGT 23054 || ||| | || || | || || | ||||| |||||||| || || ||||| | Sbjct 134869 GAGCTTGGTCGACGAATGTCGGGAGAGCCAGGGAGGCCAGATTGCACACAGCGACCTCAT 134928 Query 23055 CTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAAT 23114 | | |||||| || ||||| || || || |||||| | || || ||||| | Sbjct 134929 CGGGAGCCGTGTATTCGACAATCTCAGTGCAAAGATTGGAGCTTCGGATGGTCCCCAAGT 134988 Query 23115 TGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCT 23174 | |||||||||| |||| |||||| | |||||||||||||| || ||||| || || | Sbjct 134989 TCTTCTGGTTGCTCTTTCTATTGCAGGCGTCCTTGTAGAGCATATAGGGCGTCCCAGTTT 135048 Query 23175 CGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC- 23233 || ||| | ||||| ||| || ||| | ||||||| | ||| ||| || | Sbjct 135049 CGGTCTGTGCCTCGAGGATAGCATACCATAGTTTCTGAGCCTTTACA-GTCTGGCGACCA 135107 Query 23234 CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCC 23293 | ||| || | ||| || | | ||| | |||| || ||| |||| || |||||| Sbjct 135108 CGGCCCTCCTTCTCATATCTCTCGTATAGAGCGTTGAACTCGTCACCATAGACGTCGGCA 135167 Query 23294 AGGCCGGGCGATTGCATC-GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCT 23352 ||||| || | | ||| ||||| | |||| |||| | || || || || ||| Sbjct 135168 AGGCCAGGTGCCT-CATGAGGACAGAAGAGAGTCCATTCTTGGTTCTTCTCGACACGTTC 135226 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || | || || |||| | |||||||||| ||||| || | ||||| || || Sbjct 135227 CATGAACAAGTCAGGAGTCCACATGGCGTAGAACAAGTCGCGTGCTCTAACCTCTTCCTT 135286 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 |||| ||||||| ||| | ||||||||| |||||||| || ||||| ||||||||||| Sbjct 135287 GCCGTGGTTCTTTCTCAGGTTCAAAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTA 135346 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 | |||||| || || || | ||||||||| |||||||||||||| || || || || || Sbjct 135347 GATGGCAAAAGCACCTGGGCGCTTATTGCCACCCTGATCGACGTAGCGAGCAGTATTATT 135406 Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592 | | || | ||||| || | || |||||||| | |||| ||| || | || Sbjct 135407 GAAGACGCGAAGCATGGGGATAAGCCCGTTGGAGGTGCCGTTGGTGCCTGCAATGTAGGA 135466 Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 ||| | || |||| | || | | || ||| || ||||| | | || || ||||| Sbjct 135467 TCCTGTGGCACGAATGCAATGGGCATTGAGACCAATACCTCCAGCTGTCTTGGAGATCAT 135526 Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAA 23712 || || || || ||||| || || |||||||||||||| ||||| | | | ||| Sbjct 135527 GGCACAAGTCTTGAGGGTGTCATATATTCCCTCGATGCTGTCTTCTTTCATGTCAATCAA 135586 Query 23713 GAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772 |||||| || |||| ||| | || || || |||| ||| || || || ||||| Sbjct 135587 GAAACAGGAGGACAGTTGAGGTTGAGGGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTG 135646 Query 23773 CGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832 |||||| | | ||||| ||||||||||| |||||||| ||||| || || | Sbjct 135647 GGTAAAGCACTTCTGGGACATGAGATTGTACGTCTCGATGGCCTTTTCAATATCGTCGCT 135706 Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC--TCTCGACCGTGA-CGCC 23889 ||| ||||| | || || ||||| | ||||| ||| || | || | | ||| ||| Sbjct 135707 GTGAATACCCACTGCCACACGCATAAGCATGTGTTGGGGCCGTTCAGCAACTTGATTGCC 135766 Query 23890 GTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAA 23949 ||| |||| ||| ||||| | | || ||| || || |||||||| | ||||| || Sbjct 135767 ---AATCTTGAGCAGGTATGATCTCTCCAGCGTCTTGAAACCAAAATATTGGTAGTTGAA 135823 Query 23950 GTCACGATCGTGCACTATGGCCGAATTCAA 23979 ||| || |||| || || || || || || Sbjct 135824 GTCTCGGTCGTAGACAATTGCAGAGTTGAA 135853 >seq2 Length=1089760 Score = 178 bits (196), Expect = 1e-39 Identities = 345/502 (69%), Gaps = 8/502 (2%) Strand=Plus/Minus Query 57792 TTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTAC 57851 |||||||| || || || | || || |||||||| || ||||| || || || Sbjct 280178 TTTCAAGTCATGATGGAGAATATCCACTCGGAAATGTACAGCCTTCTCATTGACACCTAT 280119 Query 57852 GTGAAGGACAACGACGAGAA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGA 57909 || |||||| | | ||||| || || |||||| |||| ||||| ||||| || || Sbjct 280118 GTAAAGGACCCCAAAGAGAAGACATAT-CTGTTCGACGCCATCGACACAATCCCTTGCAT 280060 Query 57910 TCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCG 57969 |||| ||||| ||||| ||| | | ||||||| | | | | | || ||| Sbjct 280059 TCGC-AAGAAAGCAGACTGGGCTCTGCGATGGATATCAGACAAAGAGTCGAGCTTTGCCC 280001 Query 57970 AGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAA 58029 | | ||| | || ||||| ||||||||||| || ||||| || || |||||| | | Sbjct 280000 AACGACTAGTGGCTTTCGCAGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCA 279941 Query 58030 TATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATAT 58089 | || ||| |||||| || |||||||||||||| || || ||||||| | || | Sbjct 279940 TCTTCTGGCTGAAGAGCAAAGGACTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCT 279881 Query 58090 CGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCA--A 58147 | || |||||||| | || || || ||||||||||| | | | |||| || | Sbjct 279880 CTCGTGACGAGGGCATGCACACGGACTTTGCGTGCCT--TTTGATGCAACATCTGCAGCA 279823 Query 58148 TAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGA 58207 || ||| | | | |||| ||||||| ||||| || ||| ||||||||| || Sbjct 279822 CAAGCCGGACCCACAACTCATCGAAAACATTATAACCGAAGCCGTCAGGATCGAAAAGGA 279763 Query 58208 GTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAA 58267 || ||||||| ||||| || || || ||||||| |||||| | | |||| | Sbjct 279762 ATTCCTCACCGATGCCCTCCCCGTCGCACTGCTCGGCATGAACTCGAAGCTCATGTGTCA 279703 Query 58268 GTACATTGAGTTTGTTGCCGAC 58289 |||||||||||||||||| ||| Sbjct 279702 GTACATTGAGTTTGTTGCTGAC 279681 >seq1 Length=1383374 Score = 123 bits (136), Expect = 2e-23 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||||||||| || || ||||| |||||||| | || |||||| || Sbjct 701587 CATGCAAATCTTCGTAAAGACACTTACTGGCAAGACGATCACGCTGGAGGTTGAATCGAG 701646 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| |||| | |||| |||| || | | |||||||||||| | |||||||| Sbjct 701647 CGACACGATCGACAACGTCA---AGAGCAAGATCCAGGACAAGGAAGGGATCCCGCCCGA 701703 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||| || || || || ||||| ||| |||| ||| || | || || Sbjct 701704 CCAGCAGCGCCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTA 701763 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || |||||||| || ||||| || || | || | ||||||| Sbjct 701764 CAACATCCAGAAGGAATCGACGCTCCATCTCGTGCTCCGGCTCCGCGGCGGTA 701816 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||||||||| || || ||||| ||||| || | || || || || Sbjct 701816 ATGCAAATCTTCGTAAAGACACTTACTGGCAAGACGATTACGCTGGAGGTGGAGAGCTCA 701875 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| ||| | || || |||||| Sbjct 701876 GACACGATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 701935 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||| ||||| |||||||| ||| |||| | ||||| || ||| Sbjct 701936 CAGCGGCTGATTTTCGCGGGCAAGCAGTTGGAGGACGGGCGGACTCTCAGCGACTACAAC 701995 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || | || |||| || |||||| | ||||| Sbjct 701996 ATCCAGAAGGAGAGCACGTTGCACTTGGTGCTGAGACTGCGTGGCGG 702042 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || ||||| || ||||| | || || || | Sbjct 701359 CATGCAAATCTTCGTGAAGACACTTACTGGCAAGACCATCACGCTTGAGGTCGAGTCCAG 701418 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | |||||| | || ||||||||| ||| | || || ||||| Sbjct 701419 CGACACGATCGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 701478 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| ||||| || | |||||| || || ||| || || Sbjct 701479 GCAGCGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACCCTGTCCGACTACAA 701538 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || ||||| || Sbjct 701539 CATCCAGAAGGAGTCGACCCTGCACCTGGTCCT 701571 >seq17 Length=408214 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || ||||| || |||||| | || || || ||||||||| || Sbjct 189906 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACGATC 189965 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | || |||||||||||| | ||||||||||||||||| | Sbjct 189966 GACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGCATCCCGCCCGACCAGCAGCGATTG 190025 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || ||||| ||||| || | ||||| ||| ||||||| || ||||| || || Sbjct 190026 ATCTTCGCCGGCAAGCAACTTGAAGATGGCCGAACTCTGAGCGACTACAACATCCAGAA 190084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763814554880