Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq91 232 8e-56 seq2 100 4e-16 >seq91 Length=177601 Score = 232 bits (256), Expect = 8e-56 Identities = 749/1148 (65%), Gaps = 30/1148 (3%) Strand=Plus/Plus Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 || |||||||| ||||| || ||||||| | | ||| |||| | |||||||||||| Sbjct 134901 GAGGCCAGATTGCACACAGCGACCTCATCGGGAGCCGTGTATTCGACAATCTCAGTGCAA 134960 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 ||||| | ||| || || || || | || || |||||| | || || || ||| Sbjct 134961 AGATTGGAGCTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCC 135020 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 || || || || | || || |||||||| |||| | || | || || | ||| | | Sbjct 135021 TTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCGAGGATAGCATACCATA-G 135079 Query 63129 ACTC-GAGCCTTTATTATA----GATTT-GTATCTCCTT----TCTCTTTCGTATAGAGT 63178 || ||||||||| | || | |||||| | ||| |||||||||| Sbjct 135080 TTTCTGAGCCTTTACAGTCTGGCGACCACGGCCCTCCTTCTCATATCTCTCGTATAGAG- 135138 Query 63179 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACA 63238 |||| ||||||||| || | || | | | | | ||| |||| ||||| Sbjct 135139 -------CGTT-GAACTCGTCACCATAGACGTCGGCAAGGCCAGGTGCCTCATGAGGACA 135190 Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 | | | ||| ||| || | || || |||| ||| || | |||||| |||| | Sbjct 135191 GAAGAGAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTCAGGAGTCCACAT 135250 Query 63299 AGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63357 || || || || || | || |||| || || || || |||||| | || | | Sbjct 135251 GGCGTAGAACAAG-TCGCGTGCTCTAACCTCTTCCTTGCCGTGGTTCTTTCTCAGGTTCA 135309 Query 63358 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63417 || | | | || | ||||| || || | ||| ||||| | | | || || || | Sbjct 135310 AAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACCTGGGCGCT 135369 Query 63418 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63477 | || || |||||||| | ||| | ||| || ||||| | || | | ||| || |||| Sbjct 135370 TATTGCCACCCTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCATGGGGATAA 135429 Query 63478 TACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACT 63535 ||||| || | || ||||| || | || ||| ||| |||||||||| | | Sbjct 135430 GCCCGTTGGAGGTGCCGTTGGTGCCTGCAATGTAGGATCCTGTGGCACGAATGCAATGGG 135489 Query 63536 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595 ||||| |||| || || || || | || ||||| | || || || | ||||| Sbjct 135490 CATTGA--GACCAATACCTCCAGCTGTCTTGGAGATCATGGCACAAGTCTTGAGGGTGTC 135547 Query 63596 ATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63655 ||| || || || ||||| || || |||||| || | |||||| |||| ||| | Sbjct 135548 ATATATTCCCTCGATGCTGTCTTCTTTCATGTCAATCAAGAAACAGGAGGACAGTTGAGG 135607 Query 63656 ACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63715 ||| ||||| || || || | ||| || |||||||| ||||| || || | || | Sbjct 135608 TTGAGGGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGCACTTCTGGGACAT 135667 Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACAC 63774 |||||||||||||| || || || ||||| | || ||||| || ||||| |||| Sbjct 135668 GAGATTGTACGTCTCGATGGCCTTTTCAATATCGTCGCTG-TGAATACCCACTGCCACAC 135726 Query 63775 GCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATT 63834 |||| | |||||| || || | |||| ||| || ||| || || | || ||| ||| Sbjct 135727 GCATAAGCATGTGTTGGGGCCGTTCAGCAACTTGATTGCCAATCTTGAGCAGGTATGATC 135786 Query 63835 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCG 63894 | |||| || || ||||||||||| | ||| |||||||| ||||| | ||| | | Sbjct 135787 TCTCCAGCGTCTTGAAACCAAAATATTGGTAGTTGAAGTCTCGGTCGTAGACAATTGCAG 135846 Query 63895 AATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGA 63953 | |||| || ||| | | | | || | || | | | | ||| || || ||||| Sbjct 135847 AGTTGAACTCATCAGCGTGTCTCATGAC-ACATTCGTAGGTCTCCTTGGAGATCATCGGG 135905 Query 63954 GAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAAT 64013 || ||||| |||||| ||||| ||||||| | | | ||| | ||| |||| Sbjct 135906 GAGGGTTTCTGATTTTTCGGATTGACATAGTGGTAGAGGTCCGAGACCACGGAGGAAAAT 135965 Query 64014 AGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAA 64073 | || || || | ||||| || ||||| | || || | || || || | ||||| Sbjct 135966 TGCTTCTTGGTCTGTTTGTGGAGGTTTGAAACAGCGATACGTGCTGCGAGGACTGCATAG 136025 Query 64074 TCCGGATG 64081 || ||||| Sbjct 136026 TCGGGATG 136033 >seq2 Length=1089760 Score = 100 bits (110), Expect = 4e-16 Identities = 222/330 (67%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 33575 CATCAAA---CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGA 33631 ||||||| || || || || ||||| |||||||| | | || | ||||| || Sbjct 279837 CATCAAAAGGCACGCAAAGTCCGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGA 279896 Query 33632 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33691 || ||||| |||||||| || || | || ||||| || ||||| || || ||||| Sbjct 279897 GAAGGTGAGGCCGGGCATCAGTCCTTTGCTCTTCAGCCAGAAGATGGATGCAAAGGATCC 279956 Query 33692 GGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGC 33750 || |||||||| ||||| || || || || || | |||| | || | | || | | Sbjct 279957 AGAGAAGAAGATGCCTTCGACGGCTGCGAAAGCCACTAGTCGTTGGGCAAAGCTCGACTC 280016 Query 33751 T--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 | ||| |||||| ||||||| || || ||||| | ||||| || || || Sbjct 280017 TTTGTCTGATATCCATCGCAGAGCCCAGTCTGCTTTCTTGCGAATGCAAGGGATTGTGTC 280076 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 ||||| | || ||||| | || || || || || ||||| || || || | ||| Sbjct 280077 GATGGCGTCGAACAGATATGTCTTCTCTTTGGGGTCCTTTACATAGGTGTCAATGAGAAG 280136 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAAT 33898 || ||||||||||| || || || || || Sbjct 280137 GCTGTACATTTCCGAGTGGATATTCTCCAT 280166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813947057920