Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq91 221 2e-52 seq2 114 2e-20 >seq91 Length=177601 Score = 221 bits (244), Expect = 2e-52 Identities = 749/1149 (65%), Gaps = 32/1149 (3%) Strand=Plus/Plus Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 || |||||||| || || || ||||||| | | ||| |||| | |||||||||||| Sbjct 134901 GAGGCCAGATTGCACACAGCGACCTCATCGGGAGCCGTGTATTCGACAATCTCAGTGCAA 134960 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 ||||| | ||| || || || || | || || |||||| | || || || ||| Sbjct 134961 AGATTGGAGCTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCC 135020 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 || || || || | || || |||||||| |||| | || | || || | ||| | | Sbjct 135021 TTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCGAGGATAGCATACCATA-G 135079 Query 63078 ACTC-GAGCCTTTATTATA----GATTT-GTATCTCCTT----TCTCTTTCGTATAGTGT 63127 || ||||||||| | || | |||||| | ||| |||||||| | Sbjct 135080 TTTCTGAGCCTTTACAGTCTGGCGACCACGGCCCTCCTTCTCATATCTCTCGTATAGAG- 135138 Query 63128 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 63187 |||| ||||||||| || | || | | | | ||||| |||| ||||| Sbjct 135139 -------CGTT-GAACTCGTCACCATAGACGTCGGCAAGGCCAGGTGCCTCATGAGGACA 135190 Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 | | | ||| ||| || | || || |||| ||| || | |||||| |||| | Sbjct 135191 GAAGAGAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTCAGGAGTCCACAT 135250 Query 63248 AGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306 || || || || || | | |||| || || || || |||||| | || | | Sbjct 135251 GGCGTAGAACAAG-TCGCGTGCTCTAACCTCTTCCTTGCCGTGGTTCTTTCTCAGGTTCA 135309 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63366 || | | | || | ||||| || || | ||| ||||| | | | || || || | Sbjct 135310 AAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACCTGGGCGCT 135369 Query 63367 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63426 | || || |||||||| | ||| | ||| || ||||| | || | | ||| || |||| Sbjct 135370 TATTGCCACCCTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCATGGGGATAA 135429 Query 63427 TACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACT 63484 ||||| || | || ||||| || | || ||| ||| |||||||||| | | Sbjct 135430 GCCCGTTGGAGGTGCCGTTGGTGCCTGCAATGTAGGATCCTGTGGCACGAATGCAATGGG 135489 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 ||||| |||| || || || || | || ||||| | || || || | ||||| Sbjct 135490 CATTGA--GACCAATACCTCCAGCTGTCTTGGAGATCATGGCACAAGTCTTGAGGGTGTC 135547 Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63604 ||| || ||||| ||||| || || |||||| || | |||||| |||| ||| | Sbjct 135548 ATATATTCCCTCGATGCTGTCTTCTTTCATGTCAATCAAGAAACAGGAGGACAGTTGAGG 135607 Query 63605 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63664 || ||||| || || || | ||| || |||||||| ||||| || || | || | Sbjct 135608 TTGAGGGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGCACTTCTGGGACAT 135667 Query 63665 TAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACAC 63723 |||||||||||||| || || || ||||| | || ||||| || ||||| |||| Sbjct 135668 GAGATTGTACGTCTCGATGGCCTTTTCAATATCGTCGCTG-TGAATACCCACTGCCACAC 135726 Query 63724 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTG-TTGTTTATTTTCAACAAGTAGGAT 63782 |||| | |||||| || || | |||| | | |||| ||| || || | || ||| ||| Sbjct 135727 GCATAAGCATGTGTTGGGGCCGTTCAGC-AACTTGATTGCCAATCTTGAGCAGGTATGAT 135785 Query 63783 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACC 63842 | |||| || || ||||||||||| | ||| |||||||| ||||| | ||| | Sbjct 135786 CTCTCCAGCGTCTTGAAACCAAAATATTGGTAGTTGAAGTCTCGGTCGTAGACAATTGCA 135845 Query 63843 GAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGG 63901 ||||||| | ||| | | | | || | || | | | | ||| || || ||||| Sbjct 135846 GAGTTGAACTCATCAGCGTGTCTCATGAC-ACATTCGTAGGTCTCCTTGGAGATCATCGG 135904 Query 63902 AGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAA 63961 || ||||| |||||| ||||| ||||||| | | | ||| | ||| ||| Sbjct 135905 GGAGGGTTTCTGATTTTTCGGATTGACATAGTGGTAGAGGTCCGAGACCACGGAGGAAAA 135964 Query 63962 TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATA 64021 | | || || || | ||||| || ||||| || || || | || || || | ||||| Sbjct 135965 TTGCTTCTTGGTCTGTTTGTGGAGGTTTGAAACAGCGATACGTGCTGCGAGGACTGCATA 136024 Query 64022 ATCCGGATG 64030 || ||||| Sbjct 136025 GTCGGGATG 136033 >seq2 Length=1089760 Score = 114 bits (126), Expect = 2e-20 Identities = 225/330 (68%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 33297 CATCAAA---CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGA 33353 ||||||| || || || || ||||| |||||||| | | || || |||||||| Sbjct 279837 CATCAAAAGGCACGCAAAGTCCGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGA 279896 Query 33354 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC 33413 || ||||| |||||||| || || | || ||||| || ||||| || || ||||| Sbjct 279897 GAAGGTGAGGCCGGGCATCAGTCCTTTGCTCTTCAGCCAGAAGATGGATGCAAAGGATCC 279956 Query 33414 AGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGC 33472 ||| |||||||| ||||| || || || || || | |||| | || | | || | | Sbjct 279957 AGAGAAGAAGATGCCTTCGACGGCTGCGAAAGCCACTAGTCGTTGGGCAAAGCTCGACTC 280016 Query 33473 T--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 | ||| |||||| ||||||| || || ||||| | ||||| || || || Sbjct 280017 TTTGTCTGATATCCATCGCAGAGCCCAGTCTGCTTTCTTGCGAATGCAAGGGATTGTGTC 280076 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590 ||||| | || ||||| | || || || || || ||||| || || || | ||| Sbjct 280077 GATGGCGTCGAACAGATATGTCTTCTCTTTGGGGTCCTTTACATAGGTGTCAATGAGAAG 280136 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAAT 33620 || ||||||||||| || || || || || Sbjct 280137 GCTGTACATTTCCGAGTGGATATTCTCCAT 280166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943586906240