Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq17 147 4e-30 seq1 129 1e-24 seq51 118 2e-21 seq112 107 4e-18 >seq17 Length=408214 Score = 147 bits (162), Expect = 4e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || ||| || || | |||||||| | ||||| |||||||| || Sbjct 190084 TTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGATC 190025 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || |||||||| || ||||||||||||||||| ||||| | ||||||| ||| Sbjct 190024 AATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCG 189965 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| | || || || || | ||||||||| || |||||||||||||||||||| Sbjct 189964 ATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 189906 >seq1 Length=1383374 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || | || ||||| || || || |||||||| || || ||| Sbjct 701814 CCGCCGCGGAGCCGGAGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 701755 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | || |||||||| || Sbjct 701754 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 701695 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || ||||||||||| || ||||| ||||||| ||||| ||||| ||| ||||| || Sbjct 701694 ATCCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTGTC-GCTCGATTCAAC 701636 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || || || || || ||||| ||||| || ||||| Sbjct 701635 CTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 701588 >seq51 Length=241757 Score = 118 bits (130), Expect = 2e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| ||||| |||| ||| || || || || || |||||||| || |||||| Sbjct 20505 CCACCGCGAAGACGCAAGACCAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAG 20446 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| |||||||| || || | ||| ||||| || ||| Sbjct 20445 AGAGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCCGGGGGA 20386 Query 68355 ATGCCTTCCTTGTCT 68369 ||||||||||||||| Sbjct 20385 ATGCCTTCCTTGTCT 20371 >seq112 Length=144762 Score = 107 bits (118), Expect = 4e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| || | || ||||| || || || |||||||| || || ||| Sbjct 45873 CCGCCGCGGAGGCGGGGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 45932 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | || ||||||| || Sbjct 45933 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGATGTG 45992 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || ||||||||||| | |||||| ||||| | | ||| ||||| ||| || || || Sbjct 45993 ATCCCTTCCTTGTCCTAAATCTTGCTCTTGATGTTGTTGATTGTGTC-GCTCGACTCAAC 46051 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || || | || || ||||| | ||| |||||||| Sbjct 46052 CTCCAGCGTGATCGTCTTGACAGTAAGTGTCTTCATGAAAATCTGCAT 46099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921617054590080