Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq26 95.1 3e-14 seq36 87.8 4e-12 >seq26 Length=352299 Score = 95.1 bits (104), Expect = 3e-14 Identities = 357/553 (65%), Gaps = 8/553 (1%) Strand=Plus/Minus Query 297169 ACCTTTGAATCCTCGATACCACGGTTTCATTT-CGACGAGATCTTCTCCAGCAATCAATC 297227 |||||||||||| || |||| || | ||| | | || ||||| || || || | Sbjct 282905 ACCTTTGAATCCGCGGAACCAGGGCTGCATAGGCTTCCAG-TCTTCGCCGGCCATTCTGC 282847 Query 297228 GCTTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGG 297287 | || | |||||| ||||| |||| ||||||||| | |||||| || ||| || | Sbjct 282846 GTTTGAGGTTGTCCACGATATCTTCTGGATTGTAGTTGGGGATAGAAGAACTCCAGCCCG 282787 Query 297288 TACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTG 297347 | || || || | |||||| || || | | || | | || || || ||| | Sbjct 282786 TGCCAATACCGTCAGCACCATTGACGAGGACCATTGGGACGATCGGTACGTATACCTCGG 282727 Query 297348 GTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGA 297407 | |||||||| | | |||||||| ||| |||||| || || | | | | Sbjct 282726 GCTCGATCTTCTTGTCATCATCATAGTTATAGGACAGAAGGGGTTCATCGGCTTGGTGAA 282667 Query 297408 AAACCTGTC--GAGTCTGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATC 297465 | | || | | | || | | || |||||||| ||||| || || || ||| Sbjct 282666 ACAGCTTCCTTGCGAATGGCGAT--AGACGGGTGAAAATGTATCGAGCGCTTGCAGAATC 282609 Query 297466 CTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATT 297525 | || ||||| || | ||| || ||||| ||| |||| |||||| || || Sbjct 282608 GCTGCCGCCCTGGTTTCGGGTACCAAATTGGCCTGAGGGCTCCAACAAGTTGACATTGTT 282549 Query 297526 GCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATG 297585 ||||||| | || || ||| || || ||| || ||||||| ||| ||||| Sbjct 282548 CGATCCGACAAAGCTTTGGGCCAGGCCGACAATCGTCTGCTGGAGAGATGTTTCACCATG 282489 Query 297586 GTGATAGGCGCT-ATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCG 297644 |||||| ||| | || | | | || |||| | || |||||||||| || | Sbjct 282488 GTGATACGCGGTCATAC-CACCGACCAAACCCGCCAGCTCGGCAACCTTCATATCCTTTT 282430 Query 297645 TCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAA 297704 ||| |||||||||||| || ||| || ||||| || ||| ||| || | |||||||| Sbjct 282429 TCAGATTGCGCTTGAAGCATGCATACATGACTTTTCGCTGACCAGGCTTTAGACCATCAA 282370 Query 297705 CGACCGACGGAAT 297717 | || || || || Sbjct 282369 CTACTGAGGGGAT 282357 >seq36 Length=294547 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/202 (71%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 332810 AATGATCACGACACCTCCACCAAAGTTCTTAAGTGCTTCGGCCATTGCTCCGAGACTCTC 332869 |||||| |||||||| || | || | ||| || || | || | || || | || Sbjct 183746 AATGATGACGACACCACCCTCGAACTCCTTCAGAGCCTTGGAAAGAGCACCCAACGAATC 183687 Query 332870 ACGGTCAACGAAGTTGGTCGGTTCGTCCAAAACGATCACGTGGGGTTGTTGCCATAGAGC 332929 |||||||| | ||||||| ||||||||||||||||||| || || ||||||| | || Sbjct 183686 ACGGTCAAGGTAGTTGGTGGGTTCGTCCAAAACGATCAAATGAGG-CGTTGCCA-CGTGC 183629 Query 332930 -AGCGCCGATAACCAATTTCAGCTTTTGCCCGCCAGATAGACCACGAATGCGAGAATGAG 332988 |||| | | ||| | || | || || ||||| |||||||| ||||| || || | Sbjct 183628 AAGCGGCAAGAACGACCTTGACACGCTGACCACCAGACAGACCACGCATGCGGGAGTGGG 183569 Query 332989 TTGTAAATTCAGGGTCGAGACC 333010 | ||||||| |||||||| Sbjct 183568 AGATCAATTCAGCATCGAGACC 183547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873443378400