Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 123 2e-23 seq91 116 4e-21 seq112 93.3 4e-14 seq51 86.0 6e-12 >seq1 Length=1383374 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||| | | ||||| ||||| | ||||||||| || || |||||||| || | Sbjct 701815 ACCGCCGCGGAGCCGGAGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGA 701756 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| |||| || ||||||||||| ||| | || || |||||||||||||| || Sbjct 701755 GAGCGTGCGGCCGTCCTCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCGGGCGG 701696 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || || || || || ||| || || | || || | | || || Sbjct 701695 GATCCCTTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCGATCGTGTCGCTCGATTCAAC 701636 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| || | || |||||||| |||||||| Sbjct 701635 CTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 701588 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| ||| ||||| | || | ||| || || || |||||||| || | Sbjct 702042 CCGCCACGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTG 701983 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || ||| |||| || | ||||||||| || |||| |||||||||||||| |||||| Sbjct 701982 AGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGA 701923 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || || | || || | ||||| Sbjct 701922 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACC 701863 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| || | || |||||||| |||||||| Sbjct 701862 TCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 701816 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | |||||| ||||||| || ||||||||| Sbjct 701556 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCGAGTTGCTTGCCG 701497 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||||||||| || || || || || || || || || || || Sbjct 701496 GCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGATTTG 701437 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || || || || | || | ||||||||| || | || Sbjct 701436 ACATTGTCGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTAAGTGTC 701377 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 701376 TTCACGAAGATTTGCAT 701360 >seq91 Length=177601 Score = 116 bits (128), Expect = 4e-21 Identities = 352/532 (66%), Gaps = 19/532 (4%) Strand=Plus/Plus Query 154905 ACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTG 154964 || |||| ||| ||||| || || ||||| ||||| ||||| || || || | Sbjct 135219 ACACGTTCCATGAACAAGTCAGGAGTCCACATGGCGTAGAACAAGTCGCGTGCTCTAACC 135278 Query 154965 TCTTCAGCGCCCATGTTTCGCTTTAAA-TTCAAAAAATCATATATGTCGGCGTGCCACGG 155023 ||||| ||| || ||| | | | |||||||| || | | ||| |||||||| || Sbjct 135279 TCTTCCTTGCCG-TGGTTCTTTCTCAGGTTCAAAAAGTCGAACACGTCTGCGTGCCATGG 135337 Query 155024 CTCTAAATATACGGCCATCGCGCCTTTGCGTTTT---CCTCCTTGATCCACGTGACGCAC 155080 ||| | || | ||| | || ||| ||| || || || ||||| |||| || | Sbjct 135338 CTCGAGGTAGATGGCAAAAGCACCTGGGCGCTTATTGCCACCCTGATCGACGTAGCGAGC 135397 Query 155081 ACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCC--- 155137 | ||||||| | ||||| | || || | ||| ||| |||||||||||||| Sbjct 135398 AGTATTATTGAAGACGCGAAGCATGGGGATAAGCCCGTTGGAGGTGCCGTTGGTGCCTGC 135457 Query 155138 -ACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGCCCAAACCTCC-GCCG 155195 | ||| ||| || | | || ||| |||| | || | |||||| || | Sbjct 135458 AATGTAGGATCCTGTGGCACGAATGCA----ATGGGCATTGAGACCAATACCTCCAGCTG 135513 Query 155196 TATTT-AGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTC 155254 | || |||| | || || |||| | || || || ||||| | |||||||||||| Sbjct 135514 TCTTGGAGATCATGGCACA-AGTCTTG-AGGGTGTCATATATTCCCTCGATGCTGTCTTC 135571 Query 155255 TTTCAACGTCAA-CAAGAAACACGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATA 155313 |||| | ||||| ||||||||| || || | ||||||||||||| ||||| || | Sbjct 135572 TTTC-ATGTCAATCAAGAAACAGGAGGACAGTTGAGGTTGAGGGGTTCCGGCGTTGAAAA 135630 Query 155314 ATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGG 155373 || || |||||| ||||| || | || | | ||||| || |||||||| Sbjct 135631 GGGTGGGCGAAGCGTGGGTAAAGCACTTCTGGGACATGAGATTGTACGTCTCGATGGCCT 135690 Query 155374 CGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 ||||| || | ||| ||||| | ||||| ||||| ||||||||||| Sbjct 135691 TTTCAATATCGTCGCTGTGAATACCCACTGCCACACGCATAAGCATGTGTTG 135742 >seq112 Length=144762 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | | |||| ||||| | ||||||||| || || |||||||| || | | Sbjct 45873 CCGCCGCGGAGGCGGGGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAG 45932 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || ||||||||||| ||| | || || ||||||||||||| | Sbjct 45933 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGATGTG 45992 Query 64337 ATTCCTTCTTTTTC 64350 || ||||| || || Sbjct 45993 ATCCCTTCCTTGTC 46006 >seq51 Length=241757 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 |||||||| || || |||||||| || | || ||||| ||||||| || ||||||||| Sbjct 20475 GTCGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCTTCGAGTTGCTTGCCG 20416 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || |||||||| || ||||| ||||| || ||| Sbjct 20415 GCGAAGATCAGGCGTTGCTGGTCCGGGGGAATGCCTTCCTTGTCT 20371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641902060160