Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq91 138 1e-27 seq2 129 6e-25 seq1 107 2e-18 seq17 87.8 2e-12 >seq91 Length=177601 Score = 138 bits (152), Expect = 1e-27 Identities = 988/1564 (63%), Gaps = 64/1564 (4%) Strand=Plus/Plus Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093 |||||| ||||| |||| | || | | ||||| ||||| ||||| ||||| || || Sbjct 134297 CAAGTCGACGAGATCCTTCAGCAGCCAGGGATTGACAACCTGGAACTCACCGGCAAGGAC 134356 Query 146094 GCGCCTCAGA-TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCT 146152 || | ||| || | || ||| |||| ||||| | |||||||| ||||| || | Sbjct 134357 ACGGCG-AGAGTAGATATTAGATGTGTACGGTTCGAAGCATTCGTTGTTGCCGAGGATTT 134415 Query 146153 GCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTT 146212 | | |||| || || |||||| || || || | |||||| | | || ||| | Sbjct 134416 GAGAAGTCGAGGCAGTGGGCATGGGAGCAACAAGGAGAGAGTTGCGAATACCATGTTTGG 134475 Query 146213 GAATCT----TTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTG 146268 ||||| |||| | || ||||| |||||| | | | |||| || ||| Sbjct 134476 CAATCTCGGCTTTCAAGGCGTC----CCAATCCCACAAGT---CTGAGGGAGTGACATTC 134528 Query 146269 TAGTTGTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGA 146328 | ||||||| || | | |||| | ||| ||||| ||||| | |||||| | Sbjct 134529 CACATGTCGTATTGAAGAATGCCTTGCGACACTGGGCTGCCTTCGTATGTTTCATATGTT 134588 Query 146329 CCGTCGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCG 146388 || | ||| |||||||| || ||| ||||| | | ||| |||||||| | Sbjct 134589 CCCTGCTCCTTTGCCAGTTCACAAGAAGCAGTGAGAGCAGCATGGTAGATGGTCTCGAAG 134648 Query 146389 ATCATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCACAA-- 146446 || | || | ||||||||| |||| | || | | | ||| ||| Sbjct 134649 ATTTGGATATTCAATTGCCTGGCCTCGGGAGAGTCGAAAGGAAGAC---GCAGCGCAAGG 134705 Query 146447 -AGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTC 146505 |||||||||||||||| || | |||| ||| ||||| |||||| ||| || ||| Sbjct 134706 AAGGCGTCGGCGAGACCTTGAACTCCGAGACCGACGGGTCGGTGTCGGAAGTTGCTCTTC 134765 Query 146506 GCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACA 146565 || | | || |||| |||| | ||||| |||||||| || || || ||| Sbjct 134766 TTCGCTTCAGGGACAGGGTAGTAGTTGATATCGATAATCTTGTTTAGGTTGCGAGTCACA 134825 Query 146566 ATTTTCGTCAAACGATTCAGCAGGACATAGTCAAATGT---TTTAGTTTTAACGTTGACG 146622 | | || | || || | | ||||| || | || || || |||| Sbjct 134826 ACCTGAGTGACCTCATGAAGACGACCGAAGTCATATTCACCTCGAGCTTG---GTCGACG 134882 Query 146623 CACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATAC 146682 | | || || | ||||||| || || || || ||| || | || Sbjct 134883 AATGTCGGGAGAGCCAGGGAGGCCAGATTGCACACAGCGACCTCATCGGGAGCCGTGTAT 134942 Query 146683 TGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTA 146742 | |||||||| | ||| || ||| || |||| | ||||| || || ||||| || Sbjct 134943 TCGACAATCTCAGTGCAAAGATTGGAGCTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTC 135002 Query 146743 AACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCG 146802 | ||||||| ||||||||||||||| || || ||| |||||| | | |||| Sbjct 135003 TTTCTATTGCAGGCGTCCTTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCG 135062 Query 146803 ACGATGAATCTAAACAAA-TCTCTG-GCCTTTACTTGTCTTTCGTACA-GTTTATTCTTT 146859 | ||| | | | || | | |||| |||||||| |||| || || | | ||| Sbjct 135063 AGGAT--AGCATACCATAGTTTCTGAGCCTTTACA-GTCTGGCGACCACGGCCCTCCTTC 135119 Query 146860 TCGTATTTCTCGTACA-ATATTTCAAAACTAGA-ACCGTACTCGTCGAGGAGGCCGGGAT 146917 || ||| ||||||| | | || || || | ||| || ||||| ||||| || Sbjct 135120 TCATATCTCTCGTATAGAGCGTTGAA--CTCGTCACCATAGACGTCGGCAAGGCCAGGTG 135177 Query 146918 ACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAAT 146977 || | |||||||| || | |||||||| |||| || || |||||||| ||||| | Sbjct 135178 CCTCATGAGGACAGAAGAGAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGT 135237 Query 146978 CGGGAATCCAAA-GGCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCCATGTTG 147036 | ||| |||| | ||| || | ||||||||| || | | || || ||| ||| Sbjct 135238 CAGGAGTCCACATGGCGTAGAA-CAAGTCGCGTGCTCTAACCTCTTCCTTGCCGTGGTTC 135296 Query 147037 CGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGT 147096 ||||| ||| | | ||| | | || | ||||| ||||| | ||| ||| | Sbjct 135297 TTTCTCAGGTTCAAAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAA 135356 Query 147097 GCGCCTTTTCGCTTA---CCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGT 147153 || ||| |||||| || ||||||||||||| ||| | | ||||||||||| || Sbjct 135357 GCACCTGGGCGCTTATTGCCACCCTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGA 135416 Query 147154 AACATGGACACGAGGCCGCCGGATTT---TGTGGTGCC------GTTGTAT--TG-AGCG 147201 | ||||| | || ||| ||| | ||||||| || | || || || Sbjct 135417 AGCATGGGGATAAGCCCGTTGGAGGTGCCGTTGGTGCCTGCAATGTAGGATCCTGTGGCA 135476 Query 147202 CTGACGCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGC-GGACTC 147260 | | || || | | || || | |||||| | || || |||| || | || Sbjct 135477 CGAATGCAATGGGCATTGAGACCAATACCTCCAGCTGTCTTGGAGATCATGGCACAAGTC 135536 Query 147261 GTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATG-CATTGCAGGAAACACG 147319 || | ||| | || || || |||||||||||||| || ||| || | || |||||| | Sbjct 135537 TTG-AGGGTGTCATATATTCCCTCGATGCTGTCTTCTTTCATGTCAAT-CAAGAAACAGG 135594 Query 147320 AACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACG 147379 | ||| ||| || || || || || || || ||||| ||||| || || Sbjct 135595 AGGACAGTTGAGGTTGAGGGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGC 135654 Query 147380 TGCCCAGACTCATCA-ATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATG 147438 | | ||| | |||| ||||| || ||||| | || || |||| |||||| Sbjct 135655 ACTTCTGGGACATGAGATTG-TACGTCTCGATGGCCTTTTCAATATCGTCGCTGTGAATA 135713 Query 147439 GCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTG---ACT 147495 ||| || || ||||| |||||||| ||||| ||||| ||| || | |||| | Sbjct 135714 CCCACTGCCACACGCATAAGCATGTGTTGGGGCCGTTCAGCA---ACTTGATTGCCAATC 135770 Query 147496 TTTAATAGATATCCATTGGTCAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTG 147555 || | || ||| | ||| || ||||||||||| || | ||||| | |||| | | Sbjct 135771 TTGAGCAGGTATGATCTCTCCAGCGTCTTGAAACCAAAATATTGGTAGTTGAAGTCTCGG 135830 Query 147556 TTGT 147559 | || Sbjct 135831 TCGT 135834 >seq2 Length=1089760 Score = 129 bits (142), Expect = 6e-25 Identities = 335/501 (67%), Gaps = 21/501 (4%) Strand=Plus/Minus Query 46980 ATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACG---AAGAGAAG 47036 |||||| |||||||||||| ||||||||| || || | || ||| |||||||| Sbjct 280157 ATCCACTCGGAAATGTACAGCCTTCTCATTGACACCTATGTAAAGGACCCCAAAGAGAAG 280098 Query 47037 CAAGCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGG 47096 | || || ||| |||| | || || ||| | |||| || || || ||| Sbjct 280097 ACATAT---CTGTTCGACGCCATCGACACAATCCCTTGCATTCGCAAGAAAGCAGACTGG 280041 Query 47097 GCCATGAAGTACATTGAAAACGAAAACGTCACTCTG-GCCGAACGTTTGATCGCTTTCGC 47155 || || | || | || || | ||| || ||| |||| | | |||||||| Sbjct 280040 GCTCTGCGATGGATATCAGACAAAGA-GTCGAGCTTTGCCCAACGACTAGTGGCTTTCGC 279982 Query 47156 CATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAA 47215 |||||| ||| |||||||||| || |||||| | || || | |||| | ||| Sbjct 279981 AGCCGTCGAAGGCATCTTCTTCTCTGGATCCTTTGCATCCATCTTCTGGCTGAAGAGCAA 279922 Query 47216 AGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCA 47275 |||| | |||||||||||||| || ||||||||| ||||| | ||||| ||| |||| Sbjct 279921 AGGACTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCATGCA 279862 Query 47276 CACCAACTTTGCCTGTC-TCTACTACAACA-CTAGAGTCGATCAAAAGTTGGACGTGCCC 47333 ||| ||||||| || | | | | ||||| || || || ||| |||| | | Sbjct 279861 CACGGACTTTGCGTGCCTTTTGATGCAACATCTGCAG-----CACAAGCCGGAC--CCAC 279809 Query 47334 ACCGTCAGCG---ACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAG 47390 | | ||| || |||| | ||||||||||| || || | ||| || || |||| Sbjct 279808 AAC-TCATCGAAAACATTATAACCGAAGCCGTCAGGATCGAAAAGGAATTCCTCACCGAT 279750 Query 47391 GCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTT 47450 || || |||| | | | || |||||| || || | ||| | ||||||| || ||| Sbjct 279749 GCCCTCCCCGTCGCACTGCTCGGCATGAACTCGAAGCTCATGTGTCAGTACATTGAGTTT 279690 Query 47451 GTCGCCGACCGCCTGCTCGTT 47471 || || ||||| |||||| || Sbjct 279689 GTTGCTGACCGTCTGCTCCTT 279669 >seq1 Length=1383374 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | || || |||||| || | ||| ||| || || || ||||| |||| Sbjct 702042 CCGCCACGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTG 701983 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||| || || ||| | |||| |||||||| || ||||| Sbjct 701982 AGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGA 701923 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| ||| ||||| |||| |||| ||||| | ||||| || Sbjct 701922 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG-TCGATCGTGTCTGAGCTCTCCAC 701864 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| || || || ||||| || || ||||| Sbjct 701863 CTCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 701816 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || ||||| || || || || || || Sbjct 701556 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCGAGTTGCTTGCCG 701497 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || || || ||||||||||||||| ||| || ||| Sbjct 701496 GCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGATTTG 701437 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | |||||| || | || | || ||||| || || || Sbjct 701436 ACATTGTCGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTAAGTGTC 701377 Query 127097 TTTACAAAAATCTGCATGGC 127116 || || || || |||||||| Sbjct 701376 TTCACGAAGATTTGCATGGC 701357 >seq17 Length=408214 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || || || ||||| |||| || || || ||| || || || || || ||| ||||| Sbjct 190084 TTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGATC 190025 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTC 127044 ||||||||||| ||||| || ||||| |||||||| ||| || ||||| |||| || Sbjct 190024 AATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGACGTTG-TC 189966 Query 127045 GACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 || ||||| | |||||| || | ||| | || ||||| || || || || || || Sbjct 189965 GATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 189906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498042095360