Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 120 7e-22 seq51 104 6e-17 seq112 96.9 8e-15 seq17 93.3 1e-13 >seq1 Length=1383374 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || ||||||||||| |||| ||||||||| | || || | || ||| Sbjct 701571 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 701512 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||| || |||||||||||||| || || || ||| Sbjct 701511 TCGAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 701452 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || |||| ||||| | | || || || | |||||| ||| Sbjct 701451 TGGATCTTGGATTTGACATTGTCGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTC 701392 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || ||||| Sbjct 701391 TTGCCAGTAAGTGTCTTCACGAAGATTTG 701363 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| ||||| ||||| |||| ||||||||| | | || | || || Sbjct 701799 AGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 701740 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || ||||| || ||||||||||| || || ||||| ||| Sbjct 701739 TCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCTTCCTTGTCC 701680 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | ||| || |||| |||||||||| Sbjct 701679 TGGATCTTGCTCTTGACGTTGTCGATCGTGTCGCTCGATTCAACCTCCAGCGTGATCGTC 701620 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || ||||| Sbjct 701619 TTGCCAGTAAGTGTCTTTACGAAGATTTG 701591 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||||||| || | ||| | || |||||| |||| ||||||||| | |||| Sbjct 702036 CGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTC 701977 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || |||| |||||| || ||||| || || ||||||||||||||| ||| || Sbjct 701976 CGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCC 701917 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||||||| | || || |||| | Sbjct 701916 TCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAGC 701857 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || || ||||| Sbjct 701856 GTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTG 701819 >seq51 Length=241757 Score = 104 bits (114), Expect = 6e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||| |||||||| ||||| ||||| |||| ||||||||| | | ||| Sbjct 20499 CGAAGACGCAAGACCAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTG 20440 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || ||||| ||||||||||| || || ||||||||||| ||| ||| Sbjct 20439 CGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCCGGGGGAATGCCT 20380 Query 199529 TC 199530 || Sbjct 20379 TC 20378 >seq112 Length=144762 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || ||||| ||||| ||||| |||| ||||||||| | | || | || || ||| Sbjct 45891 ACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCC 45950 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| || || ||||| || ||||||||||| | || ||||| |||| | Sbjct 45951 AGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCGGATGTGATCCCTTCCTTGTCCTAA 46010 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||| | | | || ||||| | | || || |||| |||||||||||| Sbjct 46011 ATCTTGCTCTTGATGTTGTTGATTGTGTCGCTCGACTCAACCTCCAGCGTGATCGTCTTG 46070 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || || |||| ||||| || Sbjct 46071 ACAGTAAGTGTCTTCATGAAAATCTG 46096 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 199425 GGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCT 199484 |||| || ||||| ||||| |||| ||||||||| | | || | |||||||| || | Sbjct 46123 GGTGCAGGGTCGAGTCCTTCTGGATGTTGTAGTCGGACCTGGTGCGGCCATCTTCGAGTT 46182 Query 199485 GCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCT 199544 |||| ||||||||||| || |||||||| || || ||| || || ||||| |||| Sbjct 46183 GCTTGCCGGCGAAGATCAGGCGCTGCTGTTCGGGCGGAATGCCCTCCTTGTCCTGGATCT 46242 Query 199545 T 199545 | Sbjct 46243 T 46243 >seq17 Length=408214 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| || ||| | |||||||| || ||||| |||||||||| Sbjct 190086 CCTTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGA 190027 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | ||||||||||| || || ||||| || || ||||| ||| ||| | Sbjct 190026 TCAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGT 189967 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || || | ||||| ||||| |||||||| || || || | Sbjct 189966 CGATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 189907 Query 199620 A 199620 | Sbjct 189906 A 189906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178914591311088