Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 163 3e-35 seq17 125 8e-24 seq112 114 1e-20 seq51 105 8e-18 >seq1 Length=1383374 Score = 163 bits (180), Expect = 3e-35 Identities = 153/192 (80%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || ||||| |||| || ||||||||||| || || Sbjct 701778 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCTGCAAAG 701719 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||||||||| ||| | | ||||||||| |||||| |||||| ||| Sbjct 701718 ATCAGGCGCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTGCTCTTGA-CGTT 701660 Query 46523 GCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||||||||||||| || |||| |||||| || ||||| || || || || || Sbjct 701659 GTCGATCGTGTCGCTCGATTCAACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTAC 701600 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 701599 GAAGATTTGCAT 701588 Score = 161 bits (178), Expect = 1e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || |||||| ||||| ||||||||||| || ||||| |||| ||| Sbjct 701568 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCG 701509 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || |||||||||||||| |||| |||||||||||| | || | || |||||||||| | Sbjct 701508 AGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 701449 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||| | | | ||||||||| || || || || | ||||||||| ||| Sbjct 701448 ATCTTGGATTTGACATTGTCGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTTG 701389 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||||||||| Sbjct 701388 CCAGTAAGTGTCTTCACGAAGATTTGCAT 701360 Score = 150 bits (166), Expect = 2e-31 Identities = 166/217 (76%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 || ||||| ||||| || |||||||| ||||| ||||||||| ||||| ||| |||| Sbjct 702028 CAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTC 701969 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | ||||||||| ||||| |||| ||||||||||| | || | || ||||||||| Sbjct 701968 CTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 701909 Query 46501 CATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGA 46556 | ||||||| ||||| ||| | | | |||||| |||| ||||| |||| ||| | Sbjct 701908 CTGGATCTTCGACTTGA-CGTTGTCGATCGTGTCTGAGCTC---TCCACCTCCAGCGTAA 701853 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||| || || || || || ||||||||||| Sbjct 701852 TCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 701816 >seq17 Length=408214 Score = 125 bits (138), Expect = 8e-24 Identities = 139/183 (76%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||| ||||| || | || || || |||||||||||||| | Sbjct 190086 CCTTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGA 190027 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||||| ||| | || |||||||| |||||| ||||| ||| | Sbjct 190026 TCAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGA-CGTTG 189968 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||||| ||| || || || | |||||||| |||||||| || || || || Sbjct 189967 TCGATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 189908 Query 46583 AAG 46585 ||| Sbjct 189907 AAG 189905 >seq112 Length=144762 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||| || || ||||| |||| || ||||||||||| || || Sbjct 45909 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAG 45968 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| |||||||||||||| | | | ||||||||| ||||| |||||| | Sbjct 45969 ATCAGGCGCTGCTGGTCGGATGTGATCCCTTCCTTGTCCTAAATCTTGCTCTTGATGTTG 46028 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | ||||||||||| || || |||| |||||| || ||| | || || || || | Sbjct 46029 TTGATTGTGTCGCTCGACTCAACCTCCAGCGTGATCGTCTTGACAGTAAGTGTCTTCATG 46088 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 46089 AAAATCTGCAT 46099 Score = 104 bits (114), Expect = 3e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| ||||| | || ||||| |||||||||||||| Sbjct 46137 TCCTTCTGGATGTTGTAGTCGGACCTGGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAG 46196 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT 46509 |||| ||||||||| |||| ||| | || |||||||||| |||||| Sbjct 46197 ATCAGGCGCTGCTGTTCGGGCGGAATGCCCTCCTTGTCCTGGATCTT 46243 >seq51 Length=241757 Score = 105 bits (116), Expect = 8e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| ||||| || | || ||||| ||||| ||||||||||| |||||||| | Sbjct 20494 ACGCAAGACCAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCC 20435 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| ||||| |||||||||||||| |||| ||| |||||||| | || | || ||||| Sbjct 20434 GTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCCGGGGGAATGCCTTCCTT 20375 Query 46498 GTC 46500 ||| Sbjct 20374 GTC 20372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235121617280