Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 145 8e-30 seq2 141 9e-29 seq112 100 3e-16 seq17 96.9 3e-15 seq51 91.5 1e-13 >seq1 Length=1383374 Score = 145 bits (160), Expect = 8e-30 Identities = 174/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| || || || ||||| || || || | || || ||| | | Sbjct 701816 ATGCAAATCTTCGTAAAGACACTTACTGGCAAGACGATTACGCTGGAGGTGGAGAGCTCA 701875 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || |||| ||||| ||||| ||||| | ||||| Sbjct 701876 GACACGATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCA 701934 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||||| |||| ||||||||| ||| |||| |||| ||| || |||| ||||||||| Sbjct 701935 GCAGCGGCTGATTTTCGCGGGCAAGCAGTTGGAGGACGGGCGGACTCTCAGCGACTACAA 701994 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| ||| ||| |||| ||||||||| | || | ||||||| Sbjct 701995 CATCCAGAAGGAGAGC-ACGTTGCACTTGGTGCTGAGACTGCGTGGCGGCC 702044 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| |||||||| | || |||||| ||| | Sbjct 701360 ATGCAAATCTTCGTGAAGACACTTACTGGCAAGACCATCACGCTTGAGGTCGAGTCCAGC 701419 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | ||| || |||| ||||| ||||| || ||| | ||||| Sbjct 701420 GACACGATCGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 701479 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| || || || |||| |||||||| |||||||||| Sbjct 701480 CAGCGCCTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACCCTGTCCGACTACAAC 701539 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| |||| ||||| |||| || ||| | | |||||| Sbjct 701540 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTCCGTCTCCGTGGCGGC 701587 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| |||||||| || || || ||||| || ||||| | || || || | | | Sbjct 701588 ATGCAAATCTTCGTAAAGACACTTACTGGCAAGACGATCACGCTGGAGGTTGAATCGAGC 701647 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | | | |||| || |||| ||||| || || || || ||||||| Sbjct 701648 GACA-CGATCGACAACGTCAAGAGCAAGATCCAGGACAAGGAAGGGATCCCGCCCGACCA 701706 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| |||||||| |||| ||||| ||| |||||||| Sbjct 701707 GCAGCGCCTGATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAA 701766 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| |||||| ||||||| ||| | ||||| || Sbjct 701767 CATCCAGAAGGAATCGACGCTCCATCTCGTGCTCCG 701802 >seq2 Length=1089760 Score = 141 bits (156), Expect = 9e-29 Identities = 359/536 (67%), Gaps = 19/536 (4%) Strand=Plus/Plus Query 132699 CTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT 132758 |||| |||| |||| | | |||||| | ||| || || ||||| ||||| || |||| Sbjct 279654 CTTGTTGCC---CAGGGCAAGGAGCAGACGGTCAGCAACAAACTCAATGTACTGACACAT 279710 Query 132759 G-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCT 132817 | | |||| | || | || ||||| || || || || |||||||| || | | Sbjct 279711 GAGCTTCG-AGTTCATGCCGAGCAGTGCGACGGGGAGGGCATCGGTGAGGAATTCCTTTT 279769 Query 132818 CGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCA 132877 |||| ||| || ||||| | || | | | | | | |||| ||| || Sbjct 279770 CGATCCTGACGGCTTCGGTTATAATGTTTTCGATGAGTTGTGGGTCCGGCTTGTGCTGCA 279829 Query 132878 AATGCTTGAACATCAA---GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGA 132934 ||| ||| |||||| ||| |||||||| |||| ||||||||| | || |||| Sbjct 279830 GATG-TTG--CATCAAAAGGCACGCAAAGTCCGTGTGCATGCCCTCGTCACGAGAGATGA 279886 Query 132935 GTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGG 132994 | |||||| ||| || | ||||||||| || || | || ||||| || |||| | Sbjct 279887 GCTCGTTGGAGAAGGTGAGGCCGGGCATCAGTCCTTTGCTCTTCAGCCAGAAGATGGATG 279946 Query 132995 CGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGA 133054 | || || || ||||||| ||| |||||||| ||||||||||| || || | | | | Sbjct 279947 CAAAGGATCCAGAGAAGAAGATGCCTTCGACGGCTGCGAAAGCCACTAGTCGTTGGGCAA 280006 Query 133055 ACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTT--TGACGCA 133112 | | | |||||| | ||||| ||||| ||||| || || |||||| | ||| Sbjct 280007 AGCTCGACTCTTTGTCTGATATCCATCGCAGAGCCCAGTCTGC--TTTCTTGCGAATGCA 280064 Query 133113 CGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGT 133172 || || || |||||||||| |||| | ||||||| | | || ||||| Sbjct 280065 AGGGATTGTGTCGATGGCGTCGAACAGATATGTCTTCTCTTTGGGGTCCTTTACATAGGT 280124 Query 133173 GTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||| || | |||||||||||||| | |||||||| || |||||| Sbjct 280125 GTCAATGAGAAGGCTG--TACATTTCCGAGTGGATATTCTCCATCATGACTTGAAA 280178 >seq112 Length=144762 Score = 100 bits (110), Expect = 3e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||| | || || || || | ||| || ||||| | || || ||| | | | Sbjct 46099 ATGCAGATTTTCATGAAGACACTTACTGTCAAGACGATCACGCTGGAGGTTGAGTCGAGC 46040 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | ||| | | |||| || || ||||| || || || | ||||||| Sbjct 46039 GACACAAT-CAACAACATCAAGAGCAAGATTTAGGACAAGGAAGGGATCACATCCGACCA 45981 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | |||||||| |||||||| |||| ||||| ||| |||||||| Sbjct 45980 GCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTCTCGGACTACAA 45921 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGC 38454 |||||| |||||| ||||||| ||| | |||| Sbjct 45920 CATCCAGAAGGAATCGACGCTCCATCTCGTGC 45889 >seq17 Length=408214 Score = 96.9 bits (106), Expect = 3e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || ||||||||||| ||||||||| | || |||||| | |||||| | Sbjct 189906 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCGTCCGACACGATC 189965 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| || || || || ||||||| ||||| | Sbjct 189966 GACAACG-TCAAGTCCAAGATCCAAGACAAGGAAGGCATCCCGCCCGACCAGCAGCGATT 190024 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| || || || || | || || || | ||||||||||||||| || Sbjct 190025 GATCTTCGCCGGCAAGCAACTTGAAGATGGCCGAACTCTGAGCGACTACAACATCCAGAA 190084 Query 38432 GG 38433 || Sbjct 190085 GG 190086 >seq51 Length=241757 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| || || |||||| | ||||| || || || || | ||| ||||| || || || Sbjct 20372 GACAAGGAAGGCATTCCCCCGGACCAGCAACGCCTGATCTTCGCCGGCAAGCAACTCGAA 20431 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| ||||| ||| ||||||||||||||| |||||| |||| || || |||| || Sbjct 20432 GACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAATCGACCCTCCACCTGGTCTTG 20491 Query 38457 CGT 38459 ||| Sbjct 20492 CGT 20494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169898997760