Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11-
19] 464 sequences; 41,583,904 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq2 105 8e-18
seq91 95.1 1e-14
>seq2
Length=1089760
Score = 105 bits (116), Expect = 8e-18
Identities = 205/300 (68%), Gaps = 2/300 (1%)
Strand=Plus/Plus
Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041
|||||||| | | || | || || || || || | || |||||||||||| | |
Sbjct 279868 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGTCCTTTGCTC 279927
Query 19042 tttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAA 19101
|| | |||||| || || ||||| |||||||| ||||| || ||||| || ||||| |||
Sbjct 279928 TTCAGCCAGAAGATGGATGCAAAGGATCCAGAGAAGAAGATGCCTTCGACGGCTGCGAAA 279987
Query 19102 GCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATC 19160
|| ||||||| || || | || | || || | ||| |||||| ||| ||||| ||
Sbjct 279988 GCCACTAGTCGTTGGGCAAAGCTCGACTC-TTTGTCTGATATCCATCGCAGAGCCCAGTC 280046
Query 19161 AGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATC 19220
|| ||||| | || || ||||| || || | | || ||||| | ||| |
Sbjct 280047 TGCTTTCTTGCGAATGCAAGGGATTGTGTCGATGGCGTCGAACAGATATGTCTTCTCTTT 280106
Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280
| || || ||||| | || || | | ||||||||||| || || ||||| || ||
Sbjct 280107 GGGGTCCTTTACATAGGTGTCAATGAGAAGGCTGTACATTTCCGAGTGGATATTCTCCAT 280166
>seq91
Length=177601
Score = 95.1 bits (104), Expect = 1e-14
Identities = 351/543 (65%), Gaps = 8/543 (1%)
Strand=Plus/Plus
Query 48264 TCTTCATTGCCACTATTCCTTTTAAG-TTCAAGAAAGTCCATTATATCAGCATGCCATGG 48322
||||| ||||| ||| || | || ||||| |||||| | | || || ||||||||
Sbjct 135279 TCTTCCTTGCCGTGGTTCTTTCTCAGGTTCAA-AAAGTCGAACACGTCTGCGTGCCATGG 135337
Query 48323 TTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGC 48382
|| | || || || | ||||||| || ||||| || || ||||| | || | ||
Sbjct 135338 CTCGAGGTAGATGGCAAAAGCACCTGGGCGCTTATTGCCACCCTGATCGACGTAGCGAGC 135397
Query 48383 AGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGA 48442
|||||| || | || | | ||| |||| || || || || | || ||||| || |
Sbjct 135398 AGTATTATTGAAGACGCGAAGCATGGGGATAAGCCCGTTGGAGGTGCCGTTGGTGCCTGC 135457
Query 48443 AATATAACTTCCACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATT 48500
||| || ||| | || | || | | ||||| | || ||||| || || |
Sbjct 135458 AATGTAGGATCCTGTGGCACGAATGCAATGGGCATTGAGA--CCAATACCTCCAGCTGTC 135515
Query 48501 TTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATC 48560
|| || || | ||||| || ||||| ||||| ||||| || || || || ||| ||
Sbjct 135516 TTGGAGATCATGGCACAAGTCTTGAGGGTGTCATATATTCCCTCGATGCTGTCTTCTTTC 135575
Query 48561 ATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTT 48620
|| | | | ||||| |||| ||| || ||| ||||| | || || | ||
Sbjct 135576 ATGTCAATCAAGAAACAGGAGGACAGTTGAGGTTGAGGGGTTCCGGCGTTGAAAAGGGTG 135635
Query 48621 GGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCT 48680
|| || || || |||| || |||| || | | || || || || || | ||
Sbjct 135636 GGCGAAGCGTGGGTAAAGCACTTCTGGGACATGAGATTGTACGTCTCGATGGCCTTTTCA 135695
Query 48681 ATATCC-CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAAC 48739
||||| | || || ||||| | | |||||||| | ||| | ||| || | |||| |
Sbjct 135696 ATATCGTCGCTG-TGAATACCCACTGCCACACGCATAAGCATGTGTTGGGGCCGTTCAGC 135754
Query 48740 AATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTT 48799
|| || || || || | || |||||| | |||| || || ||||||||||| |
Sbjct 135755 AACTTGATTGCCAATCTTGAGCAGGTATGATCTCTCCAGCGTCTTGAAACCAAAATATTG 135814
Query 48800 GTA 48802
|||
Sbjct 135815 GTA 135817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562105539768960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |