Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 105 8e-18 seq91 95.1 1e-14 >seq2 Length=1089760 Score = 105 bits (116), Expect = 8e-18 Identities = 205/300 (68%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041 |||||||| | | || | || || || || || | || |||||||||||| | | Sbjct 279868 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGTCCTTTGCTC 279927 Query 19042 tttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAA 19101 || | |||||| || || ||||| |||||||| ||||| || ||||| || ||||| ||| Sbjct 279928 TTCAGCCAGAAGATGGATGCAAAGGATCCAGAGAAGAAGATGCCTTCGACGGCTGCGAAA 279987 Query 19102 GCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATC 19160 || ||||||| || || | || | || || | ||| |||||| ||| ||||| || Sbjct 279988 GCCACTAGTCGTTGGGCAAAGCTCGACTC-TTTGTCTGATATCCATCGCAGAGCCCAGTC 280046 Query 19161 AGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATC 19220 || ||||| | || || ||||| || || | | || ||||| | ||| | Sbjct 280047 TGCTTTCTTGCGAATGCAAGGGATTGTGTCGATGGCGTCGAACAGATATGTCTTCTCTTT 280106 Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 | || || ||||| | || || | | ||||||||||| || || ||||| || || Sbjct 280107 GGGGTCCTTTACATAGGTGTCAATGAGAAGGCTGTACATTTCCGAGTGGATATTCTCCAT 280166 >seq91 Length=177601 Score = 95.1 bits (104), Expect = 1e-14 Identities = 351/543 (65%), Gaps = 8/543 (1%) Strand=Plus/Plus Query 48264 TCTTCATTGCCACTATTCCTTTTAAG-TTCAAGAAAGTCCATTATATCAGCATGCCATGG 48322 ||||| ||||| ||| || | || ||||| |||||| | | || || |||||||| Sbjct 135279 TCTTCCTTGCCGTGGTTCTTTCTCAGGTTCAA-AAAGTCGAACACGTCTGCGTGCCATGG 135337 Query 48323 TTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGC 48382 || | || || || | ||||||| || ||||| || || ||||| | || | || Sbjct 135338 CTCGAGGTAGATGGCAAAAGCACCTGGGCGCTTATTGCCACCCTGATCGACGTAGCGAGC 135397 Query 48383 AGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGA 48442 |||||| || | || | | ||| |||| || || || || | || ||||| || | Sbjct 135398 AGTATTATTGAAGACGCGAAGCATGGGGATAAGCCCGTTGGAGGTGCCGTTGGTGCCTGC 135457 Query 48443 AATATAACTTCCACTAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATT 48500 ||| || ||| | || | || | | ||||| | || ||||| || || | Sbjct 135458 AATGTAGGATCCTGTGGCACGAATGCAATGGGCATTGAGA--CCAATACCTCCAGCTGTC 135515 Query 48501 TTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATC 48560 || || || | ||||| || ||||| ||||| ||||| || || || || ||| || Sbjct 135516 TTGGAGATCATGGCACAAGTCTTGAGGGTGTCATATATTCCCTCGATGCTGTCTTCTTTC 135575 Query 48561 ATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTT 48620 || | | | ||||| |||| ||| || ||| ||||| | || || | || Sbjct 135576 ATGTCAATCAAGAAACAGGAGGACAGTTGAGGTTGAGGGGTTCCGGCGTTGAAAAGGGTG 135635 Query 48621 GGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCT 48680 || || || || |||| || |||| || | | || || || || || | || Sbjct 135636 GGCGAAGCGTGGGTAAAGCACTTCTGGGACATGAGATTGTACGTCTCGATGGCCTTTTCA 135695 Query 48681 ATATCC-CATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAAC 48739 ||||| | || || ||||| | | |||||||| | ||| | ||| || | |||| | Sbjct 135696 ATATCGTCGCTG-TGAATACCCACTGCCACACGCATAAGCATGTGTTGGGGCCGTTCAGC 135754 Query 48740 AATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTT 48799 || || || || || | || |||||| | |||| || || ||||||||||| | Sbjct 135755 AACTTGATTGCCAATCTTGAGCAGGTATGATCTCTCCAGCGTCTTGAAACCAAAATATTG 135814 Query 48800 GTA 48802 ||| Sbjct 135815 GTA 135817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105539768960