Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq91 120 4e-21 seq78 114 2e-19 seq2 95.1 1e-13 seq106 93.3 5e-13 >seq91 Length=177601 Score = 120 bits (132), Expect = 4e-21 Identities = 202/290 (70%), Gaps = 2/290 (1%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| ||||||||||| || || | || |||||||| |||||||| | || |||||||| Sbjct 135380 CTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCATGGGGATAAGCCCGTTGGA 135439 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||||||| || | ||||| || | ||| || | || || | || Sbjct 135440 GGTGCCGTTGGTGCCTGCAATGTAGGATCCTGTGGCACGAATGCAATGGGCATTGAGACC 135499 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || || | ||||||||| | || || ||||| ||||| || || ||||| Sbjct 135500 AATACCTCCAGCTGTCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCATATATTCCCTC 135559 Query 1630245 GATCGAGTCGGCCTTCATGTCCA-CGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 ||| ||| | |||||||| | | ||||| || || || ||| || || | || | Sbjct 135560 GATGCTGTCTTCTTTCATGTCAATCAAGAAA-CAGGAGGACAGTTGAGGTTGAGGGGTTC 135618 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATG 1630353 |||||||||| || ||||||| || ||| || ||| | | |||||| Sbjct 135619 CGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGCACTTCTGGGACATG 135668 Score = 89.7 bits (98), Expect = 6e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| || | |||| ||||||| ||||| || | |||||| || | ||| ||||| Sbjct 135227 CATGAACAAGTCAGGAGTCCACATGGCGTAGAACAAGTCGCGTGCTCTAACCTCTTCCTT 135286 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 ||||||||||||| | |||| | |||||| | ||| |||||||| ||||| ||||| Sbjct 135287 GCCGTGGTTCTTTCTCAGGTTCAAAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTA 135346 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTT 1628591 | |||||| || || |||||| Sbjct 135347 GATGGCAAAAGCACCTGGGCGCTT 135370 >seq78 Length=197218 Score = 114 bits (126), Expect = 2e-19 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| | || || || || ||||| ||||| ||||| || |||| ||| | || Sbjct 11401 CTTTTCGAGATCATTCTGGCGGCAAACTATCTCGATATCAAAGCTTTGCTGGATGTCGGC 11460 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| |||| |||||||||||||||||||||||||| |||||||| || ||||| || Sbjct 11461 TGCAAGACTGTCGCCAACATGATCAAGGGCAAGTCGCCGGAGGAGATACGTAAGACGTTC 11520 Query 1592288 AACATC 1592293 || ||| Sbjct 11521 AATATC 11526 >seq2 Length=1089760 Score = 95.1 bits (104), Expect = 1e-13 Identities = 196/279 (70%), Gaps = 17/279 (6%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||| | |||||| |||| |||||||||||| || || || Sbjct 279868 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGTCCTTTGCTC 279927 Query 869240 TTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AA 869297 || ||||| ||||||| ||| || || ||||| |||||||| |||||||| || || Sbjct 279928 TTCAGCCAGAAGATGGATGCA-AAGGATCCAGAGAAGAAGATGCCTTCGACGGCTGCGAA 279986 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT-TG--ATCCACTTCATCG 869354 |||| | || || | ||||||| |||| ||| |||| || ||||| || | Sbjct 279987 AGCC-ACTAGTCGTTGGGCAAAG--CTCGA----CTCTTTGTCTGATATCCATCGCAGAG 280039 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCG-CGAA-AGAGGTGGTC 869412 ||||||| || || || | | | || | |||||||||||| |||| ||| || Sbjct 280040 CCCAGTCTGCTTTCTTGCGAATGCAAGGGATTGTGTCGATGGCGTCGAACAGATATG--T 280097 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 ||| || |||||||| ||||||||||| || || || Sbjct 280098 CTTCTCTTTGGGGTCCTTTACATAGGTGTCAATGAGAAG 280136 >seq106 Length=148855 Score = 93.3 bits (102), Expect = 5e-13 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1852499 TTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGA 1852558 |||||||| |||| | ||| |||| ||||||||||||||||||||| || |||| Sbjct 137309 TTGTCGAGAAACCCGTGAATGTCCGCAAGGAGGATCTTGACCCGACAGCCCGCTCGGAGG 137368 Query 1852559 AAGTCGGCCAGTTTGAAGATGGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCC 1852618 |||| || | ||| | || ||||| |||||||| |||||| | || |||| || Sbjct 137369 AAGTGCGCAATTTTCATCATCGGCACGAAGTAGCCGCAGTGCGGTCTTCCTGTCGTAGCA 137428 Query 1852619 GTGCCCCAATATATGATCA 1852637 |||||||| || || |||| Sbjct 137429 GTGCCCCAGTAGATTATCA 137447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107101121987088