Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq91 104 4e-16 seq2 102 1e-15 seq78 96.9 5e-14 seq60 91.5 2e-12 >seq91 Length=177601 Score = 104 bits (114), Expect = 4e-16 Identities = 179/260 (69%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| ||||| ||||| || || | || |||||||| |||||||| | ||| |||||||| Sbjct 135380 CTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCATGGGGATAAGCCCGTTGGA 135439 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||||||| || | ||||| || | ||| || | || || | || Sbjct 135440 GGTGCCGTTGGTGCCTGCAATGTAGGATCCTGTGGCACGAATGCAATGGGCATTGAGACC 135499 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || || | ||||||||| | || || | || || || || || || ||||| Sbjct 135500 AATACCTCCAGCTGTCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCATATATTCCCTC 135559 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| | |||||||| | || || || || || ||| || | | || || Sbjct 135560 GATGCTGTCTTCTTTCATGTCAATCAAGAAACAGGAGGACAGTTGAGGTTGAGGGGTTCC 135619 Query 2073780 GGCATTGAAGAGCGTGGGCG 2073799 ||| ||||| || ||||||| Sbjct 135620 GGCGTTGAAAAGGGTGGGCG 135639 Score = 89.7 bits (98), Expect = 8e-12 Identities = 277/432 (64%), Gaps = 12/432 (3%) Strand=Plus/Plus Query 2071578 GACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTG 2071635 ||| | ||| ||||| || |||| | ||| |||| |||| ||||| ||||||||| Sbjct 134945 GACAATCTCAGTGCAAAGATTGGAG--CTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTC 135002 Query 2071636 GTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTG 2071695 | ||| ||||||||||| ||||| ||||||| || || ||| |||| ||| | Sbjct 135003 TTTCTATTGCAGGCGTCCTTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCG 135062 Query 2071696 ACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCG----CGGCCCTNNNN 2071751 | ||| || |||| | || | || || | || ||| ||||||| Sbjct 135063 AGGATAGCATACCATAGTTTCTGAGCCTTTACAGT----CTGGCGACCACGGCCCTCCTT 135118 Query 2071752 NNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGC 2071811 | || |||| || || | || | | ||| ||||| || || Sbjct 135119 CTCATATCTCTCGTATAGAGCGTTGAACTCGTCACCATAGACGTCGGCAAGGCCAGGTGC 135178 Query 2071812 CTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTC 2071871 ||| || || ||||| | ||| || | || | || || ||| |||| ||| Sbjct 135179 CTCATGAGGACAGAAGAGAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTC 135238 Query 2071872 GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 2071931 ||||||| | |||| || | ||||| || | ||| ||||||||||||||||| Sbjct 135239 AGGAGTCCACATGGCGTAGAACAAGTCGCGTGCTCTAACCTCTTCCTTGCCGTGGTTCTT 135298 Query 2071932 TTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 2071991 | |||||| | |||||| | ||| |||||||| ||||| |||||| |||||| || Sbjct 135299 TCTCAGGTTCAAAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGC 135358 Query 2071992 GCCCTTGCGCTT 2072003 || |||||| Sbjct 135359 ACCTGGGCGCTT 135370 >seq2 Length=1089760 Score = 102 bits (112), Expect = 1e-15 Identities = 216/311 (69%), Gaps = 21/311 (7%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| ||| ||| | |||||| ||| |||||||||||| || || || Sbjct 279868 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATCAGTCCTTTGCTC 279927 Query 794401 TTGAGCCAAAAGATGG---CACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC- 794456 || ||||| ||||||| || || | | | ||||| |||||||| |||||||| || Sbjct 279928 TTCAGCCAGAAGATGGATGCAAAGGATC---CAGAGAAGAAGATGCCTTCGACGGCTGCG 279984 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGT-TGAT--CCACTTCAT 794513 |||||| || || || | |||||| | | | |||||||| |||| ||| || Sbjct 279985 AAAGCC-ACTAGTCGTTGGGCAAAGCT--CGA----CTCTTTGTCTGATATCCATCGCAG 280037 Query 794514 CGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCG-CGAA-AGAGGTGG 794571 ||||| ||||| || || | | | || | |||||||||||| |||| ||| || Sbjct 280038 AGCCCAGTCTGCTTTCTTGCGAATGCAAGGGATTGTGTCGATGGCGTCGAACAGATATG- 280096 Query 794572 TCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGG 794631 |||||| |||||||| || |||||||| ||||| || ||| | || |||||| Sbjct 280097 -TCTTCTCTTTGGGGTCCTTTACATAGGTGTCAATGAGAAGGCTGTACATTTCCGAGTGG 280155 Query 794632 ATGTTTTCGAT 794642 || || || || Sbjct 280156 ATATTCTCCAT 280166 >seq78 Length=197218 Score = 96.9 bits (106), Expect = 5e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 2035614 GTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCC 2035673 ||||||||| | || || ||| | || || || || ||||| ||||| ||||| | Sbjct 11386 GTCGACCAAGAAATGCTTTTCGAGATCATTCTGGCGGCAAACTATCTCGATATCAAAGCT 11445 Query 2035674 CTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGAC 2035733 | || ||| | || |||||||| || |||||| | ||||||||||||||||| ||||| Sbjct 11446 TTGCTGGATGTCGGCTGCAAGACTGTCGCCAACATGATCAAGGGCAAGTCGCCGGAGGAG 11505 Query 2035734 ATCCGCAAGACCTTTAACATC 2035754 || || ||||| || || ||| Sbjct 11506 ATACGTAAGACGTTCAATATC 11526 >seq60 Length=225368 Score = 91.5 bits (100), Expect = 2e-12 Identities = 126/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||| ||||| ||||||||||||||||| || ||||||||| |||| ||||| || ||| Sbjct 165191 GTATTTGGTCACGGCCTTGGTACCCTCGGACACGGCGTGCTTGGCGAGTTCACCAGGCAG 165250 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || | |||| || |||||||| |||| | ||| ||| |||||| || | Sbjct 165251 GATGAGTCTGACGGATGTTTGGATCTCTCGGGAGGAGATTGTGGACTTCTTGTT-GTAGG 165309 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACG 1485643 | || || | ||| |||||| ||| || |||| ||||| ||||||| Sbjct 165310 CAGCAAGCTTGGAGGCTTCGGTGGCGACACGCTCGAAGATGTCTGAAACAAACG 165363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916197042203696