Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq91 192 6e-44 seq2 125 7e-24 seq1 123 2e-23 seq17 105 6e-18 seq112 91.5 1e-13 >seq91 Length=177601 Score = 192 bits (212), Expect = 6e-44 Identities = 1117/1757 (64%), Gaps = 59/1757 (3%) Strand=Plus/Plus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GTCGCTTTA 148110 |||||| |||||||||||| || |||||||| || ||||||| | || ||| | | Sbjct 134121 GACTGGGACTGGTCAATGAAGGCACCACGGTCCGCTGCCATTTGCAGGACGGTC-CGCTG 134179 Query 148111 TCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGC 148170 | | || ||||| | ||||||||||| ||||| | | || | | | |||| Sbjct 134180 GC-TGATTTCCCATACGGTCTTGTACAGAGCTTTGATGTCCGCAGGGACGTTGGGGATGT 134238 Query 148171 GCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGA 148230 || | |||||||| | || | ||| |||| ||| | ||| | ||||| | Sbjct 134239 TTTGGATCGAGCCGCCCTCGGCGATGATCCGATTCTTCATATTGTCGGACCATAGGCCCA 134298 Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 |||| || || | | ||| | |||| || ||||| ||||| ||||| || || | Sbjct 134299 AGTCGACGAGATCCTTCAGCAGCCAGGGATTGACAACCTGGAACTCACCGGCAAGGACAC 134358 Query 148291 GCCGCAGA-TACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349 | || ||| || | || || ||||||| || | ||||||||||| | || || Sbjct 134359 GGCG-AGAGTAGATATTAGATGTGTACGGTTCGAAGCATTCGTTGTTGCCGAGGATTTGA 134417 Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409 | |||| || ||||||||| || || || || |||||||| | ||| | || Sbjct 134418 GAAGTCGAGGCAGTGGGCATGGGAGCAACAAGGAGAGAGTTGCGAATACCATGTTTGGCA 134477 Query 148410 ATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCG 148469 || | | |||| || |||| ||||| | || || || || |||||||||||| Sbjct 134478 ATCTCGGCTTTCAAGGCGTCCCAATCCCACAAGTCTGAGGGAGTGACATTCCACATGTCG 134537 Query 148470 TACTGCAGAATGCC--GCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCG 148527 || || |||||||| ||| | | |||||||| ||||| | || | ||| ||| Sbjct 134538 TATTGAAGAATGCCTTGCGAC--ACTGGGCTGCCTTCGTATGTTTCATATGTTCCCTGCT 134595 Query 148528 CCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCC 148587 || |||||||| || || ||| || | | ||| || |||||| ||||| Sbjct 134596 CCTTTGCCAGTTCACAAGAAGCAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGA 134655 Query 148588 TGTTGAGCAGCGCCGCCGACTCG---CTTTCGTACGGCATACGCAGCCGCACAAACGCGT 148644 | || | | ||| | |||| ||| | || | ||||||| | || |||| Sbjct 134656 TATTCA--ATTGCC-TGGCCTCGGGAGAGTCGAAAGGAAGACGCAGCGCAAGGAAGGCGT 134712 Query 148645 CGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGC 148704 |||| || || || || || | || | ||| |||||| | |||| ||| Sbjct 134713 CGGCGAGACCTTGAACTCCGAGACCGACGGGTCGGTGTCGGAAGTTGCTCTTCTTCGCTT 134772 Query 148705 TCTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTG 148764 || || |||| |||| ||||| ||||||| || ||||| ||| |||| | Sbjct 134773 CAGGGACAGGGTAGTAGTTGATATCGATAATCTTGTTTAGGTTGCGAGTCACAACCTGAG 134832 Query 148765 TAA--TTCTG--------CGCAG-CA-ATTCAAAATCGTACTTGTCATCTACG-ATGCAT 148811 | | | || || || || |||| | ||| |||| || ||| ||| | Sbjct 134833 TGACCTCATGAAGACGACCGAAGTCATATTC-ACCTCGAGCTTG--GTCGACGAATG--T 134887 Query 148812 CGGTTCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCT 148871 ||| | || | ||||| ||||||||||| || |||||| || || |||| || Sbjct 134888 CGG--GAGAGCCAGGGAGGCCAGATTGCACACAGCGACCTCATCGGGAGCCGTGTATTCG 134945 Query 148872 ACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTG 148931 || ||||| | ||| |||||| || | ||| |||| |||||| || |||||||| Sbjct 134946 ACAATCTCAGTGCAAAGATTGGAGCTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTT 135005 Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCA-- 148989 || ||||| ||||||||||| ||||| || || |||||||| ||| | || | Sbjct 135006 CTATTGCAGGCGTCCTTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCGAGG 135065 Query 148990 CTATGAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGT 149049 || | | || || | ||| || || ||| || ||||||| ||| | Sbjct 135066 ATAGCATACCAT--AGTTTCTGAGCCTTTACAGTCTGGCGACCACGGCCCTCCTTCTCAT 135123 Query 149050 A--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTT 149107 | | ||||| ||| | |||| | || || ||| ||| | || || || || Sbjct 135124 ATCTCTCGTATAGAGC--GTTGAACTCGTCACCATAGACGTCGGCAAGGCCAGGTGCCTC 135181 Query 149108 GTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGG 149167 || || || | ||| | ||| | || | | || || | ||| |||| || || Sbjct 135182 ATGAGGACAGAAGAGAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTCAGG 135241 Query 149168 CACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCG 149227 ||| | ||||| | | |||||| || | ||||| ||| ||| | Sbjct 135242 AGTCCACATGGCGTAGAACAAGTCGCGTGCTCTAACCTCTTCCTTGCCGTGGTTCTTTCT 135301 Query 149228 CAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC 149287 |||||| | | | ||| | ||| |||||||| ||||| | ||| | || | || || Sbjct 135302 CAGGTTCAAAAAGTCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACC 135361 Query 149288 CTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCAT 149344 |||| ||||| ||||| ||||||| ||| | | || || || || |||| ||| Sbjct 135362 TGGGCGCTTATTGCCACCCTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCAT 135421 Query 149345 AGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATG--CGA--CTGCCGCGCGCTC 149400 || || || ||| |||||||| || |||| || ||| || || Sbjct 135422 GGGGATAAGCCCGTTGGAGGTGCCGTTGGTGCCTGCAATGTAGGATCCTGTGGCACGAAT 135481 Query 149401 GCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGC-AGTC 149458 ||| || ||| |||| || || || || || || ||| ||||| || | |||| Sbjct 135482 GCA--ATGGGCA--TTGAGACCAATACCTCCAGCTGT-CTTGGAGATCATGGCACAAGTC 135536 Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518 ||| || || || |||||||||||||| |||||| | || || || || Sbjct 135537 -TTGAGGGTGTCATATATTCCCTCGATGCTGTCTTCTTTCATGTCAATCAAGAAACAGGA 135595 Query 149519 GCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATA 149578 | ||| ||| || | | || ||||| ||| | |||||| ||||| ||||| | Sbjct 135596 GGACAGTTGAGGTTGAGGGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGCA 135655 Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638 |||||| ||| | | ||||| ||||| | || || || |||| || || || Sbjct 135656 CTTCTGGGACATGAGATTGTACGTCTCGATGGCCTTTTCAATATCGTCGCTGTGAATACC 135715 Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAG 149698 | || || ||||| ||||| || || || || || || |||| || ||||| ||||| Sbjct 135716 CACTGCCACACGCATAAGCATGTGTTGGGGCCGTTCAGCAACTTGATTGCCAATCTTGAG 135775 Query 149699 CAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTG 149758 || ||| | || || |||||| | ||||| || | ||||| ||||| ||| ||| Sbjct 135776 CAGGTATGATCTCTCCAGCGTCTTGAAACCAAAATATTGGTAGTTGAAGTCTCGGTCGTA 135835 Query 149759 GTCAATGGCGGCGTCGA 149775 | |||| || | || || Sbjct 135836 GACAATTGCAGAGTTGA 135852 >seq2 Length=1089760 Score = 125 bits (138), Expect = 7e-24 Identities = 278/411 (68%), Gaps = 21/411 (5%) Strand=Plus/Plus Query 120465 GAGCAGTCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAG 120524 |||||| ||||| || |||||||||||||||| |||||| || || ||||||||| || Sbjct 279672 GAGCAGACGGTCAGCAACAAACTCAATGTACTGACACATGAGCTTCGAGTTCATGCCGAG 279731 Query 120525 CAACGCCACCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAA 120584 || || || || | || |||| || ||||| || || || || || | | Sbjct 279732 CAGTGCGACGGGGAGGGCATCGGTGAGGAATTCCTTTTCGATCCTGACGGCTTCGGTTAT 279791 Query 120585 CATGG---CGAGCA-TAGTGTGGCCGGGCATCTTGTGTTC--GATGCGCGTTCGGTAGTA 120638 ||| ||| | | ||| | |||| |||||| | |||| || | Sbjct 279792 AATGTTTTCGATGAGTTGTGGGTCCGG----CTTGTGCTGCAGATGTTGCATCA-----A 279842 Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||||||||||||||||||| ||||||||| || || || ||||||||| || || Sbjct 279843 AAGGCACGCAAAGTCCGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGT 279902 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 ||||||||||| | ||||| |||| | |||| |||| |||||| || || || Sbjct 279903 GAGGCCGGGCATCAGTCCTTTGCTCTTCAGCCAGAAGATGGATGCAAAGGATCCAGAGAA 279962 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | ||| || ||| || || || || | || | ||| || ||| | |||| | Sbjct 279963 GAAGATGCCTTCGACGGCTGCGAAAGCCACTAGTCGTTGGGCAAAGCTCGAC-TCTT--T 280019 Query 120819 GTC---GATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 ||| ||||| || ||||| || || || ||||| | ||| || || Sbjct 280020 GTCTGATATCCATCGCAGAGCCCAGTCTGCTTTCTTGCGAATGCAAGGGAT 280070 >seq1 Length=1383374 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| ||| || ||| ||| ||||| |||||||| Sbjct 701557 GGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCGAGTTGCTTGCC 701498 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||||||||| || |||||||| |||||||| |||||| || Sbjct 701497 GGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGATTT 701438 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| ||| ||| || || | |||| ||| ||||| || || || Sbjct 701437 GACATTGTCGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTAAGTGT 701378 Query 133643 TTTTACGAAAATCTGCATGGC 133663 || ||||| || |||||||| Sbjct 701377 CTTCACGAAGATTTGCATGGC 701357 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 ||| ||||| || ||||| |||| | || | |||||| | ||||||||||||| | Sbjct 702007 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAA 701948 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 ||| |||||||||||||| ||||| ||||| |||||||| |||||| ||||| | Sbjct 701947 AATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 701888 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 || | |||||| | | |||||| || | || | || ||||| || || || ||||| Sbjct 701887 GTCGATCGTGTCTGAGCTCTCCACCTCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTAC 701828 Query 133649 GAAAATCTGCAT 133660 ||| || ||||| Sbjct 701827 GAAGATTTGCAT 701816 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||| || | |||| |||||| ||||||||||| Sbjct 701784 GTCGATTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCT 701725 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || |||||||||||||| ||||| ||||||||||| |||||| |||| Sbjct 701724 GCAAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTGCTCTTG 701665 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | | || || || | |||| || ||||| || || || Sbjct 701664 ACGTTGTCGATCGTGTCGCTCGATTCAACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTC 701605 Query 133644 TTTACGAAAATCTGCATG 133661 |||||||| || |||||| Sbjct 701604 TTTACGAAGATTTGCATG 701587 >seq17 Length=408214 Score = 105 bits (116), Expect = 6e-18 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAAAT 133531 ||||| || ||||| |||| || || | | | || || || |||||||| ||| | || Sbjct 190084 TTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCA-TCTTCAAGTTGCTTGCCGGCGAAGAT 190026 Query 133532 GAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTC 133591 | |||||||||||||| ||||||||||||||||| |||||| ||||| | || Sbjct 190025 CAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTC 189966 Query 133592 AACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAA 133651 | |||||||| | ||| || || | ||||| ||| ||||| || || || || ||||| Sbjct 189965 GATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 189906 >seq112 Length=144762 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || ||||| || ||||| || | |||| |||||| |||||||||||| Sbjct 45903 GTCGATTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCC 45962 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || || ||||||||||||| | ||| ||||||||||| ||||| |||| Sbjct 45963 GCAAAGATCAGGCGCTGCTGGTCGGATGTGATCCCTTCCTTGTCCTAAATCTTGCTCTTG 46022 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | | | |||||| | | ||| || || | |||| || ||| | || || || Sbjct 46023 ATGTTGTTGATTGTGTCGCTCGACTCAACCTCCAGCGTGATCGTCTTGACAGTAAGTGTC 46082 Query 133644 TTTACGAAAATCTGCATG 133661 || | ||||||||||||| Sbjct 46083 TTCATGAAAATCTGCATG 46100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417996159360