Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq91 125 1e-22 seq2 91.5 2e-12 >seq91 Length=177601 Score = 125 bits (138), Expect = 1e-22 Identities = 201/289 (70%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 259894 CATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| ||| ||| || ||| || ||||||| || || || ||||| || || | Sbjct 135668 CATGTCCCAGAAGTGCTTTACCCACGCTTCGCCCACCCTTTTCAACGCCGGAACCCCTCA 135609 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 || || || || || || || | |||||||| | || |||||||| || || Sbjct 135608 ACCTCAACTGTCCTCCTGTTTCTTGATTGACATGAAAGAAGACAGCATCGAGGGAATATA 135549 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 |||||| |||||| || || | ||||||||| | || || || || ||| | || Sbjct 135548 TGACACCCTCAAGACTTGTGCCATGATCTCCAAGACAGCTGGAGGTATTGGTCTCAATGC 135489 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 || | || ||| | || ||||| | || |||||||||||| |||||||| || Sbjct 135488 CCATTGCATTCGTGCCACAGGATCCTACATTGCAGGCACCAACGGCACCTCCAACGGGCT 135429 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | | |||||||||||||| || || | || || ||||||||||| ||| Sbjct 135428 TATCCCCATGCTTCGCGTCTTCAATAATACTGCTCGCTACGTCGATCAG 135380 >seq2 Length=1089760 Score = 91.5 bits (100), Expect = 2e-12 Identities = 213/306 (70%), Gaps = 18/306 (6%) Strand=Plus/Minus Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || || |||||||| |||| ||| || || || |||||||| || |||||||| Sbjct 280166 ATGGAGAATATCCACTCGGAAATGTACAGCCTTCTCATTGACACCTATGTAAAGGACCCC 280107 Query 1456072 GTCGAGAAGGACCACCTCT-TTCG-CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 |||||| || ||| |||| |||||||||||| | || | | | || || | Sbjct 280106 AAAGAGAAGA--CATATCTGTTCGACGCCATCGACACAATCCCTTGCATTCGCAAGAAAG 280049 Query 1456130 CCGACTGGGCGATGAAGTGG--ATCA-ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 | |||||||| || ||| |||| |||| ||| |||| ||||||| | || || Sbjct 280048 CAGACTGGGCTCTGCGATGGATATCAGACAAAGAG----TCGA-GCTTTGCCCAACGACT 279994 Query 1456187 CGTCGGCTTT-GCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTT 1456243 || |||||| || | |||||| |||||||| ||||| || | | ||| ||||||| Sbjct 279993 AGT-GGCTTTCGCAGCCGTCGAAGGCATCTTCTTCTCTGG-ATCCTTTGCATCCATCTTC 279936 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCG 1456303 ||||| |||| || || |||||||| | || ||| |||||| | ||| ||| Sbjct 279935 TGGCTGAAGAGCAAAGGACTGATGCCCGG-CCTCACCTTCTCCAACGAGCTCATCTCTCG 279877 Query 1456304 CGACGA 1456309 ||||| Sbjct 279876 TGACGA 279871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177766446347168