Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1 149 6e-31 seq112 109 5e-19 seq17 82.4 7e-11 >seq1 Length=1383374 Score = 149 bits (164), Expect = 6e-31 Identities = 174/231 (75%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | |||| |||||| || ||||| |||||||| || |||||||| ||| Sbjct 702042 CCGCCACGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTG 701983 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || ||| |||| |||| |||||| ||||| || |||| |||||||||||||| |||| Sbjct 701982 AGAGTCCGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGA 701923 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | || |||||||||| |||||| ||| | |||| | | |||||| |||| || Sbjct 701922 ATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTTGTCGATCGTGTCTGAGCTC---TC 701867 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| ||| ||||| || || || | || || || || || ||||| Sbjct 701866 CACCTCCAGCGTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 701816 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | || || |||| ||||||||||| || ||||| Sbjct 701778 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCTGCAAAG 701719 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||||||||| | || | | ||||||||| |||||| ||| | ||| Sbjct 701718 ATCAGGCGCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTGGATCTTGCTCTTGAC-GTT 701660 Query 35666 GCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||||||||||||| ||||||| ||||||||| || || || | || || || Sbjct 701659 GTCGATCGTGTCGCTCGATTCAACCTCCAGCGTGATCGTCTTGCCAGTAAGTGTCTTTAC 701600 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 701599 GAAGATTTGCAT 701588 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || |||| || || ||||| || || || Sbjct 701551 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAA 701492 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| || | || |||||||||| |||||| || | | | Sbjct 701491 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGATTTGACATT 701432 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||||||| || || ||||| | |||||| || || || || | || ||||| Sbjct 701431 GTCGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTAAGTGTCTTCAC 701372 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 701371 GAAGATTTGCAT 701360 >seq112 Length=144762 Score = 109 bits (120), Expect = 5e-19 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | | || || |||| ||||||||||| |||||||| Sbjct 45909 TCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAG 45968 Query 35606 ATCAACCGCTGCTGGTCCGAAG-GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| || | || | || ||||||||| ||||| ||| | || Sbjct 45969 ATCAGGCGCTGCTGGTCGGATGTGATCCCT-TCCTTGTCCTAAATCTTGCTCTTGA-TGT 46026 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | ||||||||||| || ||||||| ||||||||| || | || | || |||| Sbjct 46027 TGTTGATTGTGTCGCTCGACTCAACCTCCAGCGTGATCGTCTTGACAGTAAGTGTCTTCA 46086 Query 35724 CAAATATCTGCAT 35736 || |||||||| Sbjct 46087 TGAAAATCTGCAT 46099 >seq17 Length=408214 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| ||| || ||||| | || || || ||||| || || || | Sbjct 190086 CCTTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGA 190027 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | || | || |||||||| |||||| ||| | |||| Sbjct 190026 TCAATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGA-CGTTG 189968 Query 35667 -CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | ||||||| ||| || ||||| | ||||| || || ||||| Sbjct 189967 TCGATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 189921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450790985397120