Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq91 208 1e-48 seq2 100 4e-16 >seq91 Length=177601 Score = 208 bits (230), Expect = 1e-48 Identities = 630/959 (66%), Gaps = 18/959 (2%) Strand=Plus/Plus Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336 || || ||||| || || || ||||||| | | | |||| | ||||| || || Sbjct 134901 GAGGCCAGATTGCACACAGCGACCTCATCGGGAGCCGTGTATTCGACAATCTCAGTGCAA 134960 Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396 ||||| | | ||| ||||||| || | ||| || |||||| | || ||||||||| Sbjct 134961 AGATTGGAGCTTCGGATGGTCCCCAAGTTCTTCTGGTTGCTCTTTCTATTGCAGGCGTCC 135020 Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACG 69456 ||||| || ||| | || || |||||||| |||| | |||| |||| | ||| | Sbjct 135021 TTGTAGAGCATATAGGGCGTCCCAGTTTCGGTCTGTGCCTCGAGGATAGCATACCATAGT 135080 Query 69457 ACCCTAGCATTTATTACGGTCTTGTAAC---GCTTCTCTTTTTCATAT-TGT-GTATATA 69511 | ||| |||| | |||| | || | ||| || |||||| | | ||||| | Sbjct 135081 TTCTGAGCCTTTA---CAGTCTGGCGACCACGGCCCTCCTTCTCATATCTCTCGTATAGA 135137 Query 69512 GCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCA 69571 || ||| ||| || || || | || || | | ||||| |||| ||||| | | Sbjct 135138 GC-GTT-GAACTCGTCACCATAGACGTCGGCAAGGCCAGGTGCCTCATGAGGACAGAAGA 135195 Query 69572 ATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGC-T 69630 | ||| | | | | || || |||| ||| || | || ||| |||| | || | Sbjct 135196 GAGTCCATTCTTGGTTCTTCTCGACACGTTCCATGAACAAGTCAGGAGTCCACATGGCGT 135255 Query 69631 ATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAAC 69690 | || || || | | |||| ||||| || || || ||| | || | | ||| Sbjct 135256 AGAACAAG-TCGCGTGCTCTAACCTCTTCCTTGCCGTGGTTCTTTCTCAGGTTCAAAAAG 135314 Query 69691 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTT 69750 || | | || | |||||||| || || || || || | | || || || ||||| Sbjct 135315 TCGAACACGTCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACCTGGGCGCTTATTG 135374 Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || |||||||| | ||| | ||||| ||||| |||| | ||||| || |||| || Sbjct 135375 CCACCCTGATCGACGTAGCGAGCAGTATTATTGAAGACGCGAAGCATGGGGATAAGCCCG 135434 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAAT--ATTACTAATAG 69868 || || | || || || || | ||| || |||| | || ||||| | | || | Sbjct 135435 TTGGAGGTGCCGTTGGTGCCTGCAATGTAGGATCCTGTGGCACGAATGCAATGGGCATTG 135494 Query 69869 ATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928 | |||| || ||||| || | || ||||| | |||||| || | |||||||||| Sbjct 135495 A--GACCAATACCTCCAGCTGTCTTGGAGATCATGGCACAAGTCTTGAGGGTGTCATATA 135552 Query 69929 TACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTA 69988 | ||||| ||||| || ||| |||||| || | |||||| |||| |||| | || Sbjct 135553 TTCCCTCGATGCTGTCTTCTTTCATGTCAATCAAGAAACAGGAGGACAGTTGAGGTTGAG 135612 Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048 ||||| || || || | || || || ||||| || || || || | || | |||| Sbjct 135613 GGGTTCCGGCGTTGAAAAGGGTGGGCGAAGCGTGGGTAAAGCACTTCTGGGACATGAGAT 135672 Query 70049 TGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATC 70107 |||| || || || || ||| ||||| | ||| ||||| || | || |||||||| Sbjct 135673 TGTACGTCTCGATGGCCTTTTCAATATCGTCGCTG-TGAATACCCACTGCCACACGCATA 135731 Query 70108 AACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCC 70167 | ||| || || || ||||| | || ||| || || | |||||||||| | ||| Sbjct 135732 AGCATGTGTTGGGGCCGTTCAGCAACTTGATTGCCAATCTTGAGCAGGTATGATCTCTCC 135791 Query 70168 AGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226 || || || || |||||||| | ||| ||||||| ||||| | ||| |||| || Sbjct 135792 AGCGTCTTGAAACCAAAATATTGGTAGTTGAAGTCTCGGTCGTAGACAATTGCAGAGTT 135850 >seq2 Length=1089760 Score = 100 bits (110), Expect = 4e-16 Identities = 218/323 (67%), Gaps = 5/323 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || ||||| || | |||||| || | | || | ||||| || || ||||| Sbjct 279846 GCACGCAAAGTCCGTGTGCATGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTGAG 279905 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| || || | || ||||| || |||| ||||| |||||||| ||||| Sbjct 279906 GCCGGGCATCAGTCCTTTGCTCTTCAGCCAGAAGATGGATGCAAAGGATCCAGAGAAGAA 279965 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---G 39792 ||||||||| || ||||| || || || |||| | | | || | || || | Sbjct 279966 GATGCCTTCGACGGCTGCGAAAGCCACTAGTCGTTGGGCAAAGCTCGACTCTTTGTCTGA 280025 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||||| | | ||||| || |||||||| | ||||| ||||| || || || | Sbjct 280026 TATCCATCGCAGAGCCCAGTCTGCTTTCTTGCGAATGCAAGGGATTGTGTCGATGGCGTC 280085 Query 39853 AAAGAGATAATGT-TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 || |||| |||| || || | || || ||||| || || || | || || |||| Sbjct 280086 GAACAGAT-ATGTCTTCTCTTTGGGGTCCTTTACATAGGTGTCAATGAGAAGGCTGTACA 280144 Query 39912 TTTCTGAATGGATGTTTTCAATC 39934 |||| || ||||| || || ||| Sbjct 280145 TTTCCGAGTGGATATTCTCCATC 280167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904815928960