Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq91 181 1e-40 seq26 140 4e-28 seq2 82.4 8e-11 >seq91 Length=177601 Score = 181 bits (200), Expect = 1e-40 Identities = 462/698 (66%), Gaps = 4/698 (1%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||| | | ||| ||| |||| |||||| ||||| |||| ||||| |||||| Sbjct 135682 GAGACGTACAATCTCATGTCCCAGAAGTGCTTTACCCACGCTTCGCCCACCCTTTTCAAC 135623 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || || ||| ||||| |||| ||| ||| || | | ||||| || ||| Sbjct 135622 GCCGGAACCCCTCAACCTCAACTGTCCTCCTGTTTCTTGATTGACATGAAAGAAGACAGC 135563 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 ||||| || || || || || |||||| |||||| ||||||||| | || ||| Sbjct 135562 ATCGAGGGAATATATGACACCCTCAAGACTTGTGCCATGATCTCCAAGACAGCTGGAGGT 135503 Query 53423 ATCGGTATCCACTGCTCGAA-CGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 || ||| || | ||| | | | ||||| | || | || || || ||||| Sbjct 135502 ATTGGTCTCAA-TGCCCATTGCATTCGTGCCACAGGATCCTACATTGCAGGCACCAACGG 135444 Query 53482 CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAA 53541 | | || | || | | || ||||| ||||||||||| || || || || |||||| | Sbjct 135443 CACCTCCAACGGGCTTATCCCCATGCTTCGCGTCTTCAATAATACTGCTCGCTACGTCGA 135384 Query 53542 CCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 |||||||| |||||| || | || ||||||||||||||||| |||||||| || Sbjct 135383 TCAGGGTGGCAATAAGCGCCCAGGTGCTTTTGCCATCTACCTCGAGCCATGGCACGCAGA 135324 Query 53602 CATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGA 53661 | | | || ||| | | ||| | ||| || || | |||||| | | || || Sbjct 135323 CGTGTTCGACTTTTTGAACCTGAGAAAGAACCACGGCAAGGAAGAGGTTAGAGCACGCGA 135264 Query 53662 CCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720 | |||| ||| || |||||| ||| ||| | |||||| || || |||||| || | | Sbjct 135263 CTTGTTCTAC-GCCATGTGGACTCCTGACTTGTTCATGGAACGTGTCGAGAAGAACCAAG 135205 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGT 53780 | ||| || | || || | ||| || ||||| | ||||| ||||| |||| Sbjct 135204 AATGGACTCTCTTCTGTCCTCATGAGGCACCTGGCCTTGCCGACGTCTATGGTGACGAGT 135145 Query 53781 TTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 | |||| | || || || | ||||||| ||| || ||||| | Sbjct 135144 TCAACGCTCTATACGAGAGATATGAGAAGGAGGGCCGTGGTCGCCAGACTGTAAAGGCTC 135085 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 | ||||| |||| |||||| || ||| || || || ||||| || ||| || Sbjct 135084 AGAAACTATGGTATGCTATCCTCGAGGCACAGACCGAAACTGGGACGCCCTATATGCTCT 135025 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||||||| | ||| |||||||||||||||||| Sbjct 135024 ACAAGGACGCCTGCAATAGAAAGAGCAACCAGAAGAAC 134987 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || |||||||| | ||| ||||||||||||||||| |||||| | || | | || Sbjct 134155 GCGGACCGTGGTGCCTTCATTGACCAGTCCCAGTCTCTCAACATCCACTTGAAAGAACCA 134096 Query 55847 TCACTGGCCAAGTT---GAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACG 55903 | ||| |||| | |||| ||||||||| || ||||| | ||| |||||||| Sbjct 134095 ACCATGGGCAAGATCACGAGC---ATGCACTTTGCAGGCTGGAAAATGGGTCTCAAGACC 134039 Query 55904 GGTATGTACTATCTGCGGAC 55923 || |||||||| ||||| || Sbjct 134038 GGCATGTACTACCTGCGCAC 134019 >seq26 Length=352299 Score = 140 bits (154), Expect = 4e-28 Identities = 215/304 (71%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 117298 TAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACC 117357 ||| || ||||||||||| |||| |||||||| ||| |||| || || ||||| Sbjct 282644 TAGACGGGTGAAAATGTATCGAGCGCTTGCAGAATCGCTGCCGCCCTGGTTTCGGGTACC 282585 Query 117358 GAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417 ||||| || |||||||| | ||| | ||||| | || |||||| |||| |||| Sbjct 282584 AAATTGGCCTGAGGGCTCCAACAAGTTGACATTGTTCGATCCGACAAAGCTTTGGGCCAG 282525 Query 117418 GTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC 117477 | ||||||||| ||||| | ||||||||||||||||| ||| | | || Sbjct 282524 GCCGACAATCGTCTGCTGGAGAGATGTTTCACCATGGTGATACGCGGTCATACCACCGAC 282465 Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537 | |||||||||| || |||||||| || |||| || ||||| ||| ||||| Sbjct 282464 CAAACCCGCCAGCTCGGCAACCTTCATATCCTTTTTCAGATTGCGCTTGAAGCATGCATA 282405 Query 117538 AATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGA-GGGATCGAACGCTTGA 117596 || || || ||||||| ||||| |||||||| | || ||| ||||| || || || Sbjct 282404 CATGACTTTTCGCTGACCAGGCTTTAGACCATCAACTAC-TGAGGGGATAGATCGGATGT 282346 Query 117597 TGTC 117600 |||| Sbjct 282345 TGTC 282342 Score = 86.0 bits (94), Expect = 7e-12 Identities = 189/282 (67%), Gaps = 1/282 (0%) Strand=Plus/Minus Query 152025 ACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAA 152084 ||| ||||| |||||||| | ||| || | ||| |||| || || || ||||| Sbjct 282641 ACGGGTGAAAATGTATCGAGCGCTTGCAGAATCGCTGCCGCCCTGGTTTCGGGTACCAAA 282582 Query 152085 CTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 || || |||||||| | | ||||| ||||| | || || || | || |||| Sbjct 282581 TTGGCCTGAGGGCTCCAACAAGTTGACATTGTTCGATCCGACAAAGCTTTGGGCCAGGCC 282522 Query 152145 CACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTA 152204 |||||||| ||| ||| | |||||| ||||||||||| ||| | ||| | Sbjct 282521 GACAATCGTCTGCTGGAGAGATGTTTCACCATGGTGATACGCGGTCATACCACCGACCAA 282462 Query 152205 TCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAAT 152264 ||||||| || || |||||||| ||| | |||| || ||||| || || || || Sbjct 282461 ACCCGCCAGCTCGGCAACCTTCATATCCTTTTTCAGATTGCGCTTGAAGCATGCATACAT 282402 Query 152265 CACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGG 152306 || || ||||| || || | ||| || || || ||||| Sbjct 282401 GACTTTTCGCTGACCAGGCTTTAGACCATCAACTAC-TGAGG 282361 >seq2 Length=1089760 Score = 82.4 bits (90), Expect = 8e-11 Identities = 173/255 (68%), Gaps = 5/255 (2%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| ||||| |||||| ||| ||||||| ||||| ||| |||| Sbjct 279904 AGGCCGGGCATCAGTCCTTTGCTCTTCAGCCAGAAGATGGATGCAAAGGATCCAGAGAAG 279963 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA---CGGTGCATCGGAA 74921 |||||||||||||| || || || || || ||||| || || || | | | Sbjct 279964 AAGATGCCTTCGACGGCTGCGAAAGCCACTAGTCGTTGGGCAAAGCTCGACTCTTTGTCT 280023 Query 74922 GTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC-AGGGACAGTATCGATCGC 74980 | ||||| | ||||||| || || |||| | || || ||||| || ||||| || Sbjct 280024 GATATCCATCGCAGAGCCCAGTCTGC-TTTCTTGCGAATGCAAGGGATTGTGTCGATGGC 280082 Query 74981 TTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTA 75040 | ||| || || |||||||| ||| ||||| || ||||||| | ||| ||| Sbjct 280083 GTCGAACAGATATGTCTTCTCTTTGGGGTCCTTTACATAGGTGTCAATGAGAAGGCTGTA 280142 Query 75041 CGTCTCCGAATGAAT 75055 | | ||||| || || Sbjct 280143 CATTTCCGAGTGGAT 280157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212826147200