Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 >seq1 Length=1383374 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || | ||||||||| || || || || || ||| || || || |||| || Sbjct 702025 CACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGTCCGCCCGTCCTC 701966 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | ||| |||||||| || || || ||||||||||| | || | || ||| |||||| Sbjct 701965 CAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTG 701906 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 ||| ||| |||| ||| | | | ||| || ||| |||||| |||| ||| || Sbjct 701905 GATCTTCGACTTGA-CGTTGTCGATCGTGTCTGAGCT---CTCCACCTCCAGCGTAATCG 701850 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || || ||||||||||| Sbjct 701849 TCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 701816 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || |||| || || || |||| || || || ||||| || || Sbjct 701551 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAA 701492 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | ||| | || ||| |||||| ||| || ||||| | Sbjct 701491 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGATTTGACATT 701432 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | ||| ||||| ||||| || || | |||||| | || || || || || || || Sbjct 701431 GTCGATCGTGTCGCTGGACTCGACCTCAAGCGTGATGGTCTTGCCAGTAAGTGTCTTCAC 701372 Query 39273 AAAGATTTGCAT 39284 ||||||||||| Sbjct 701371 GAAGATTTGCAT 701360 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| ||||| || || || || || || || | || || || |||| || Sbjct 701797 CACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTC 701738 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || || ||||||||||||| || | | || |||||| Sbjct 701737 CAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCTTCCTTGTCCTG 701678 Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| ||| | | | ||| |||||||| || || |||| |||||| | | Sbjct 701677 GATCTTGCTCTTGA-CGTTGTCGATCGTGTCGCTCGATTCAACCTCCAGCGTGATCGTCT 701619 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || ||||||||||| Sbjct 701618 TGCCAGTAAGTGTCTTTACGAAGATTTGCAT 701588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543170919632