Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladophialophora_20immunda_20[genbank_20GCA_5F000785585.1_202014-11- 19] 464 sequences; 41,583,904 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 131 4e-25 seq17 125 2e-23 seq342 109 1e-18 seq51 107 5e-18 seq112 93.3 1e-13 >seq1 Length=1383374 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||||||| || | ||| | ||| || || |||| ||||| ||| | ||| Sbjct 702037 ACGCAGTCTCAGCACCAAGTGCAACGTGCTCTCCTTCTGGATGTTGTAGTCGCTGAGAGT 701978 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||| || || | |||||| || ||||| || || || || ||||| || ||||| || Sbjct 701977 CCGCCCGTCCTCCAACTGCTTGCCCGCGAAAATCAGCCGCTGCTGGTCCGGAGGAATGCC 701918 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||| ||||||||| | ||||| || | Sbjct 701917 CTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATCGTGTCTGAGCTCTCCACCTCCAG 701858 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||||||||| || | || |||| ||| | |||||| Sbjct 701857 CGTAATCGTCTTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 701816 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || ||||| || ||||| || |||| ||||| || | | || | || || Sbjct 701799 AGCACGAGATGGAGCGTCGATTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCC 701740 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||||||||| || ||||||||||| Sbjct 701739 TCCAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATCCCTTCCTTGTCC 701680 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| | ||| || || | |||||||||| Sbjct 701679 TGGATCTTGCTCTTGACGTTGTCGATCGTGTCGCTCGATTCAACCTCCAGCGTGATCGTC 701620 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || |||| ||| | |||||| Sbjct 701619 TTGCCAGTAAGTGTCTTTACGAAGATTTGCAT 701588 >seq17 Length=408214 Score = 125 bits (138), Expect = 2e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| ||| || ||||| |||||||| || ||||| || |||||||| Sbjct 190084 TTCTGGATGTTGTAGTCGCTCAGAGTTCGGCCATCTTCAAGTTGCTTGCCGGCGAAGATC 190025 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| || ||||||||||| || |||||||||||||||||||| ||| || ||| Sbjct 190024 AATCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCG 189965 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||| || | || || || | ||||| ||||||||||| Sbjct 189964 ATCGTGTCGGACGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 189921 >seq342 Length=3431 Score = 109 bits (120), Expect = 1e-18 Identities = 186/269 (69%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 |||||||||| |||| | ||||| ||| | ||||| ||||| | | |||| Sbjct 578 TATATTTAATGTTTGCAGTATTTTCAGGTTTAGCTGGTACAGCTTTTTCAGTATTAATAA 637 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564 | ||||||||| | | || || ||| | | | |||| ||| | ||||| Sbjct 638 GATTAGAATTATCAGGACCTGGAGTACAATTTATAGCAGATAAT---CAATTATACAATA 694 Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624 ||| || || || ||||| | || |||||||||||| | || ||||| | | | |||| Sbjct 695 GTATAATAACAGCTCATGCTATAGTGATGATTTTCTTTATGGTAATGCCAGCTTTAATAG 754 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | ||||| || || | || | || |||||||| |||| ||| |||||||| || || | Sbjct 755 GTGGTTTTGGTAACTTCTTACTACCATTAATGATAGGTGGTCCAGATATGGCATTCCCTA 814 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTA 7713 | | || ||||||||||| |||||| || Sbjct 815 GATTAAATAATATAAGTTTCTGATTATTA 843 Score = 89.7 bits (98), Expect = 1e-12 Identities = 83/103 (81%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||| |||||||| | |||||| || | |||||||| || || |||| Sbjct 1254 TTCTGGATGGCCAAAGAATCAGAAAAGATGTTGGTATAATATAGGATCTCCACCTCCTGC 1195 Query 370732 TGGATCAAA-AAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 | ||||| |||| | ||||||||||||||||| |||||||| Sbjct 1194 TACTTCAAAGAAAGAT-GTATTAAAATTTCTATCTGTTAAAAC 1153 >seq51 Length=241757 Score = 107 bits (118), Expect = 5e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || ||| |||||||| || ||||| || |||| ||||| |||| | ||| Sbjct 20499 CGAAGACGCAAGACCAGGTGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGAGTG 20440 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| || ||||| || |||||||| || ||||| ||||| || ||||| ||| Sbjct 20439 CGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGGCGTTGCTGGTCCGGGGGAATGCCT 20380 Query 225613 TCCTTGTCT 225621 ||||||||| Sbjct 20379 TCCTTGTCT 20371 >seq112 Length=144762 Score = 93.3 bits (102), Expect = 1e-13 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 225509 GGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCT 225568 |||| || || || || || |||| ||||| |||| | || | |||||||| || | Sbjct 46123 GGTGCAGGGTCGAGTCCTTCTGGATGTTGTAGTCGGACCTGGTGCGGCCATCTTCGAGTT 46182 Query 225569 GCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCT 225628 |||| || |||||||| || || || || ||||||||||| || |||||||| ||||||| Sbjct 46183 GCTTGCCGGCGAAGATCAGGCGCTGCTGTTCGGGCGGAATGCCCTCCTTGTCCTGGATCT 46242 Query 225629 T 225629 | Sbjct 46243 T 46243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192524110402016